Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value SEQ43829 150 2e-31 SEQ23565 150 2e-31 SEQ45421 91.5 2e-13 SEQ32083 87.8 2e-12 SEQ13217 87.8 2e-12 seq6726 87.8 2e-12 SEQ35906 84.2 2e-11 SEQ28820 84.2 2e-11 SEQ23137 84.2 2e-11 >SEQ43829 Length=74093 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| | || || || || Sbjct 42044 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCC 42103 Query 40747 ACCGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | || |||| | |||| || || | ||||| || || || ||| | || Sbjct 42104 AGTGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGA 42162 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| || | |||||||| |||||| Sbjct 42163 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 42222 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | || ||||| || || | ||| ||||||||||| Sbjct 42223 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGCGGC 42274 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| Sbjct 42275 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCAGT 42334 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || || ||| | |||||| Sbjct 42335 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 42394 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 42395 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 42454 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || ||||| || || | ||| ||||||| ||| Sbjct 42455 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGTGGC 42502 >SEQ23565 Length=11847 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| | || || |||||||||||| | || ||||| ||| Sbjct 9960 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAAACCATCACCCTAGAGGTCGAGCCCAG 9901 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||| || | ||||| || ||||||||| | ||||| Sbjct 9900 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 9841 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| |||||||| |||||||| || | |||||||| ||||||||| Sbjct 9840 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 9781 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| || || | ||| | || || || Sbjct 9780 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGAGGTGG 9733 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 9275 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 9216 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | ||||| || ||||||||| | |||||| Sbjct 9215 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 9156 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| |||||||| |||||||| || | |||||||| |||||||||| Sbjct 9155 CAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 9096 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| |||| || || || || | ||| | ||||| || Sbjct 9095 ATCCAGAAAGAGTCCACTCTACACCTGGTCCTTCGCCTCAGGGGTGG 9049 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 9503 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 9444 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | ||||| || ||||||||| | |||||| Sbjct 9443 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 9384 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| |||||||| |||||||| || | |||||||| |||||||||| Sbjct 9383 CAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 9324 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| |||| ||||| || || | ||| | || || || Sbjct 9323 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGAGGTGG 9277 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 9731 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 9672 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | ||||| || ||||||||| | |||||| Sbjct 9671 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 9612 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| |||||||| |||||||| || | |||||||| |||||||||| Sbjct 9611 CAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 9552 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| |||| ||||| || || | ||| | || || || Sbjct 9551 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGAGGTGG 9505 >SEQ45421 Length=309261 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | || || || |||||||| |||||||| || || || ||| Sbjct 256914 ATGCAGATCTTCATGAAGACCCTGACGGGCAAGACCATCACTTGTGAGGTTGAGCCCAGT 256973 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || | || || ||| | || || | | ||| || |||||| | | ||||| Sbjct 256974 AACACCATGGAGAATGC-CAAAGCCAAGATCCAAGCCAAGGAAGGCATCTCACCTGACCA 257032 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||| ||||| |||||||| || | | ||||||| |||| ||| Sbjct 257033 GCAGAGGCTGATATCCGCTGGCAAGCAGCTGGAGGATGGGTGCACCCTGTCTGACTTCAA 257092 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGC 40914 ||||||||| || |||| |||| | ||| || || |||| ||| Sbjct 257093 CATCCAGAAAAAGTCCACCCTGCCCATGGTG-TGAGCCTGAGAGGC 257137 >SEQ32083 Length=112626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | |||||||| || || || || || ||||||| || ||| ||| || Sbjct 102692 GGAGAGCGTGTTGTGGCCTTTGCAGCGGTGGAAGGAATCTTCTTCTCTGGCTCTTTTGCA 102633 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 | ||||| ||||||||||| || || || ||||||||||| || || ||| ||||| Sbjct 102632 TCGATATTCTGGCTCAAGAAGCGGGGACTGATGCCCGGCCTTACGTTTTCCAATGAGCTT 102573 Query 117152 ATCTCCAGGGACGAGG 117167 || ||| ||||||| Sbjct 102572 ATTAGCAGAGACGAGG 102557 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| | || ||||||||||| ||||| | || ||||| |||||| || Sbjct 105150 GAGCCGTTACTGAGAGAAAACCCCCGCCGCTTCGTTGTCTTTCCCATCGAATACCATGAT 105091 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| || |||||||| || |||||||| | || ||||| Sbjct 105090 ATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAAGAGGT 105038 >SEQ13217 Length=170878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || ||||| || |||||||| | || || ||| || Sbjct 167307 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAATCC 167248 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| || || | || || || || || || | || Sbjct 167247 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGAT 167188 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| |||| || || || |||||||| || || || | |||||| Sbjct 167187 CAGCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATAGCCGTACTTTGTCTGACTAC 167128 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| ||||||||| |||| || ||||| |||||| Sbjct 167127 AACATTCAGAAGGAGTCCACCCTTCATCTTGTGTTG 167092 >seq6726 Length=145916 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/228 (68%), Gaps = 16/228 (7%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||| ||| || ||||| || || || |||||||| |||||||| | || || || || Sbjct 106446 AAAAAGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTTGAGCCC 106505 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||| | ||| Sbjct 106506 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGAC----------------CTGAC 106549 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || | | ||| ||||| |||||||| |||| |||||||| | |||| Sbjct 106550 CAGCAGAGGCTGCTATTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCTGGCTAC 106609 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGC 40914 ||||||||||| ||| |||| ||||| || ||| ||||| || | ||| Sbjct 106610 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGC 106657 >SEQ35906 Length=62346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || ||||| || |||||||| |||| || ||| || Sbjct 33246 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACACTCGAGGTTGAACCC 33305 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| || || | || || || || || || | || Sbjct 33306 TCGGACACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 33365 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 | ||| |||| |||| || || || |||||||| || | || | | |||||| Sbjct 33366 CGGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTGCTTTGTCTGACTAC 33425 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| |||| || ||||| |||||| Sbjct 33426 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 33461 >SEQ28820 Length=113666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || | ||| || |||||||| |||| || ||| || Sbjct 62480 AAGATGCAGATTTTTGTGAAGACCCTGATGGGGAAGACCATCACGCTCGAGGTTGAACCC 62421 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| || || | || || || || || || | || Sbjct 62420 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 62361 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| |||| || || || |||||||| || | || || | |||||| Sbjct 62360 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 62301 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| | || || ||||| |||||| Sbjct 62300 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTG 62265 >SEQ23137 Length=3047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || ||||| || |||||||| |||| || ||| || Sbjct 249 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTTGAACCC 190 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| || || | || || || || || || | || Sbjct 189 TCAGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 130 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| |||| || || || |||||||| || | | || | |||||| Sbjct 129 CAGCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATGGCCCTACTTTGTCTGACTAC 70 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| | || || ||||| |||||| Sbjct 69 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTG 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514598186977520