Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value SEQ28171 91.5 1e-13 SEQ38160 84.2 2e-11 >SEQ28171 Length=118966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 97149 ATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTG 97208 |||||| ||||||||||| ||||| || || |||||||| |||| || || || | ||| Sbjct 106810 ATAGCTGGCAATGTTAAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTG 106751 Query 97209 ACAGGAAAGCTTTCCA-TCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACG 97267 || || |||| |||| |||| |||||| |||| || | |||| || || |||| | Sbjct 106750 GCAAGACAGCTCTCCATTCAC-CACATAGAACTCACAGAGGGCATGGCAAGGAGGCAGTG 106692 Query 97268 CCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATC 97319 |||| |||| |||| ||||| |||||| | | |||||||| || Sbjct 106691 CCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGATTCTTCTGTC 106640 >SEQ38160 Length=80719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || |||||||||||||||||||| ||||| |||||||| || || ||||| ||||| | | Sbjct 58676 TAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 58735 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 | || |||| || || | || || || | ||| ||||| |||||||| || Sbjct 58736 CGGGCAGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGAT 58791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346376458034390