Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value SEQ28820 114 1e-20 SEQ23137 114 1e-20 SEQ13217 111 1e-19 SEQ31259 105 6e-18 SEQ43829 104 2e-17 SEQ37766 102 7e-17 seq1037 102 7e-17 SEQ57164 96.9 3e-15 SEQ35906 96.9 3e-15 seq7114 89.7 4e-13 >SEQ28820 Length=113666 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| | || | |||||||| |||||||||||||| || || ||| || Sbjct 62262 TCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCC 62321 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| |||||||| |||| || | ||||||||| ||||| || || ||||| Sbjct 62322 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 62381 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || || || || || | ||| | ||||||| | || ||||||| || | Sbjct 62382 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 62441 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||| || || |||||||||||||| Sbjct 62442 GGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCAT 62477 >SEQ23137 Length=3047 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||||||||| || Sbjct 19 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 78 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | ||| || ||||| |||||||| |||| || | ||||||||| ||||| Sbjct 79 CAAAGTAGGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGG 138 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||| | | || || Sbjct 139 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 198 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || ||||| || || |||||||||||||| Sbjct 199 CTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 246 >SEQ13217 Length=170878 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| | || | || ||||| || ||||||||||| || || ||| || | Sbjct 167089 TCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCT 167148 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| |||||||| |||| || | ||||||||| ||||| || || ||||| Sbjct 167149 ATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 167208 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| || || || || | ||| | ||||||| | || ||||| | || | Sbjct 167209 ATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGAT 167268 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||||||||| Sbjct 167269 GGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 167304 >SEQ31259 Length=129631 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| | || | ||||||| |||||||||||||| || || ||| || Sbjct 129231 TCTCAACACAAGATGAAGGGTAGACTGCTTTTGAATGTTGTAGTCAGACAAAGTACGGCC 129290 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| |||||||| |||| || | ||||||||| ||||| || || ||||| Sbjct 129291 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 129350 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| || || || || | ||| ||||||| | || ||||||| || | Sbjct 129351 ATCTTGGATCTTGGCCTTTACATTTTCTGTAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 129410 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || || || || |||||||||||||| Sbjct 129411 GGTCTTCTCTGTAAGGGTCTTCACAAAAATCTGCAT 129446 >SEQ43829 Length=74093 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 42483 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 42424 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || || || |||||||| Sbjct 42423 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 42364 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||||||||| | ||| | || ||| Sbjct 42363 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTG 42304 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || |||||||||||| Sbjct 42303 CCGGTCAGGGTCTTCACGAAAATCTGCATG 42274 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 42255 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 42196 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || || || |||||||| Sbjct 42195 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 42136 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||| | ||| | || ||| Sbjct 42135 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTG 42076 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || || ||||| Sbjct 42075 CCGGTCAGGGTCTTCACGAAGATTTGCAT 42047 >SEQ37766 Length=173039 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||| | ||| | || | |||||||| |||||||||||||| || Sbjct 157071 ACCACCACGGAGTCTTAGCACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 157130 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA----TGAGACGCTGCTGATCGG 118626 || ||| | ||| || ||||| |||||||| ||| | || | ||||||||| | Sbjct 157131 CAAAGTATGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAG 157190 Query 118627 GAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTC 118685 |||| || || ||||| | ||| | | || | || || | ||| | ||||||| | Sbjct 157191 GAGGAATTCCTTCCTTATCCTGGA--TCTTGGCTTTACATTTTCTATAGTGTCCGAGGGT 157248 Query 118686 TCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||||| || | || || || ||||| || || |||||||||||||| Sbjct 157249 TCAACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 157301 >seq1037 Length=126922 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 |||||| || | || | |||||||| |||||||||||||| || || ||| || Sbjct 82626 TCTCAAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCC 82567 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| |||||||| |||| || | ||||||||| |||| ||| | ||||| Sbjct 82566 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGATATTCTTTCCTT 82507 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || || || || || | ||| | ||||||| | || ||||| | || | Sbjct 82506 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGAT 82447 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||||||||| Sbjct 82446 GGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 82411 >SEQ57164 Length=103104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| || ||||||||||| || Sbjct 21527 ACCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 21468 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | |||| || ||||| |||||||| |||| || | ||||||||| ||||| Sbjct 21467 CAAAGTACAGCTATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGG 21408 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||| | | || | Sbjct 21407 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAGC 21348 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | || || || || || || || |||||||||||||| Sbjct 21347 CTTGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 21300 >SEQ35906 Length=62346 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| | || | || ||||| |||||||||||||| || || || || Sbjct 33464 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGCACGGCC 33405 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| || ||||| |||| || | |||| |||| ||||| || || ||||| Sbjct 33404 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCCGATCAGGAGGAATTCCTTCCTT 33345 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || || || || || | ||| | ||||||| | || ||||||| || | Sbjct 33344 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCGAGGGTTCAACCTCGAGTGTGAT 33285 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||||||||| Sbjct 33284 GGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 33249 >seq7114 Length=58683 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||| ||||| || | || |||||||| | |||||||| || || | || | | Sbjct 894 CTCAGCACCATGTACAGAGTGGACTCTTTCTTGATGTTGTAGTCAGACAAAATGTGGCCA 953 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| |||| || |||||| | || || | || ||| || || || ||||| |||||| Sbjct 954 TCCTCCAGCTTCTTGCCAGCGAATATCAGCCTCTTCTGGTCAGGTGGGATGCCTTCCTTG 1013 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGT--CCGTGCTCTCGACCT--CGACGGT 118699 ||| || || || || | | || ||||| | || |||||||| | | || Sbjct 1014 TCTTGGATCTTGGCCTTGACATTCTTGATGGTGTGTCACTGGGCTCGACCTTTCAAGAGT 1073 Query 118700 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || ||||| ||||| ||||||||||| ||||||||| Sbjct 1074 GATGGTCTTGCCTGTCAGGGTTTTTACAAAGATCTGCATG 1113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433320560751484