Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value SEQ31259 91.5 2e-13 SEQ28820 86.0 9e-12 >SEQ31259 Length=129631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 146060 AGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGAAAGAGTTCT 146118 ||||| || || | ||| | ||||| | |||| || || || || || || | ||| | Sbjct 129229 AGTCTCAACACAAGATGAAGGGTAGACTGCTTTTGA-ATGTTGTAGTCAGACAAAGTACG 129287 Query 146119 GCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTC 146178 || ||| || | || ||||||||||| |||| ||| |||||||| |||||||||||||| Sbjct 129288 GCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 129347 Query 146179 TTTATCTTG 146187 |||||||| Sbjct 129348 CTTATCTTG 129356 >SEQ28820 Length=113666 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 146060 AGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCT 146118 ||||| || || | ||| | ||||| || ||| || || || || || || | ||| | Sbjct 62260 AGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTACG 62318 Query 146119 GCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTC 146178 || ||| || | || ||||||||||| |||| ||| |||||||| |||||||||||||| Sbjct 62319 GCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 62378 Query 146179 TTTATCTTG 146187 ||||| || Sbjct 62379 CTTATCCTG 62387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742630199747840