Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value SEQ18817 122 8e-23 SEQ81609 102 8e-17 SEQ32083 91.5 1e-13 >SEQ18817 Length=114269 Score = 122 bits (134), Expect = 8e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||||||||||| ||| || | || |||||| || | | | || ||| |||| | | Sbjct 106778 CTTTAAAAATCTGCATCCAGGGTGAAGACATTAGCTGTAGTTTCTGCCATGACTGCAAAT 106837 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||| |||||| || ||||||||||||||||| |||||||||||||| ||| Sbjct 106838 CGCTGATACTCAGAAACTCTTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTT 106897 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||||||||||| ||||||| || Sbjct 106898 TCCATAAAATCAAAGGGATTTTCTG 106922 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||| | | |||||| || || ||||| || |||||||||||||| ||| ||| Sbjct 107759 ATCCAAGTTCTACGAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 107818 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 |||||||||| || | |||||| | |||||||||||||| Sbjct 107819 AGTTCATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAA 107861 >SEQ81609 Length=287 Score = 102 bits (112), Expect = 8e-17 Identities = 178/254 (70%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566 |||||||||||| | | |||| |||| ||||||||| ||||| || || || Sbjct 263 ATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAATATTTTCCATCATGATTTGGAA 204 Query 16567 ACCATAAAAGCATCTAGCTTCGG-ATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGT 16625 |||||| || || ||||||||| ||| ||| |||||| ||| | || || | | Sbjct 203 ACCATAGAAAAATTTAGCTTCGGCATA-TTGCACTTCATTAACAAAATTCTCAGCAAGAT 145 Query 16626 TTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttt 16685 |||| ||||| ||||| || |||||| ||||| ||||| || ||||| ||||| | Sbjct 144 TTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAAGAATATGTTTTATAAAGTAAC 85 Query 16686 tttCGTTATC--TGAAAGTTTTA-ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTT 16742 || | ||| | || | ||| ||||||| ||||||| ||| || || | |||| Sbjct 84 GCTCATCATCATTTAACTTATTATTCCAGTCATTTAAATCTTGTGACAAGTCAATTTCTT 25 Query 16743 CTACAGTCCAAAAA 16756 | | ||||||||| Sbjct 24 CAGCTGTCCAAAAA 11 >SEQ32083 Length=112626 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | ||||||| || ||| | || || || | |||| ||| ||||| Sbjct 100965 ATTCTCTGTTGAACTTGACATCACACCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAA 101024 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||| ||||| |||||||||| ||||||||||||||| || ||||| ||||||| Sbjct 101025 GAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTT 101077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461954516942200