Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value SEQ29989 1119 0.0 SEQ42930 150 1e-31 SEQ55167 87.8 1e-12 >SEQ29989 Length=139411 Score = 1119 bits (1240), Expect = 0.0 Identities = 1029/1304 (79%), Gaps = 18/1304 (1%) Strand=Plus/Minus Query 107333 GAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGT 107392 || |||||| || || | ||||| ||||| ||||||||||||| |||||||||||||| Sbjct 24833 GAGGAAGCTCTGTTGGCGTTATCATGTGTGGACCCTGGGCTGCTACATGCTGCTGGCCGT 24774 Query 107393 TGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTC 107452 || | |||| || |||||||| | || | ||| ||||| || Sbjct 24773 CATTGCCCTGAAGCTGTCCCTCAG-----ACTGAGGTGT-------------CTGGACTC 24732 Query 107453 CAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGC 107512 ||| | || | ||| |||| ||||| | ||||||| | ||||||||||||||| Sbjct 24731 TGAGGAATATCAAACCCAGTACTGCAGGGATTTCCTGTACAAGACCCTGAAGCTGCCAGC 24672 Query 107513 AAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGC 107572 |||||| |||||||||||||| ||| |||| |||||||| ||| ||||||| ||||||| Sbjct 24671 AAAGAGGTCCATCAACTGTTCAGGGGTCACTCGAGGGGAGCAGACAGCAGTGATCCAGGC 24612 Query 107573 CCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCT 107632 || || | |||||||| | |||| || ||| ||| |||| | || | ||||| Sbjct 24611 TCTGCTGAATAACCTGGAGATCAAGAGGAAACGGCAGCCCTTCACAGAGGCCGACTACCT 24552 Query 107633 CAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACT 107692 | ||| || |||||||||| |||||| |||| |||||||||||| ||||||| || Sbjct 24551 TAGCATGACGGCCGACTGTGAGCACTTCAAAACCCAGAGGAAGTTCATAGAGTTCCCGCT 24492 Query 107693 GAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGA 107752 ||| ||||||||| |||||||||||||| ||||| |||||||| |||||||||||||| Sbjct 24491 GAGCAAAGAAGAGGCCGACTTCCCCATTGCATACTCCATGGTGGTTCATGAGAAGATTGA 24432 Query 107753 AAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGT 107812 ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| || Sbjct 24431 GAACTTTGAAAGGCTGCTGCGAGCTGTGTACACCCCTCAGAACATATACTGTGTCCATGT 24372 Query 107813 GGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872 ||| |||||| ||||| || ||||| |||| |||| ||||||| || |||||||| Sbjct 24371 GGACCAGAAGTCTCCAGAAACCTTCAAGCAGGCAGTCAGGGCCATTGCCTCATGCTTCCC 24312 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 ||||||||| | || |||||||||| | ||||| ||||| ||||||||||| ||||| Sbjct 24311 GAATGTCTTCTTAGCTCGTAAGTTGGTATCAGTGGTGTATGCTTCCTGGTCCAGGGTGCA 24252 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACT 107992 |||||||||||||| |||||||||||| |||||||| | ||||||||||| ||||| || Sbjct 24251 GGCTGACCTGAACTGCATGGAAGACTTGATCCAGAGCCCCGTGCCATGGAAATACTTCCT 24192 Query 107993 GAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAA 108052 ||| || |||||||||||||| ||||| ||||||||||| |||||||||| ||||||||| Sbjct 24191 GAACACCTGCGGGACAGACTTTCCCATCAAGACCAATGCTGAGATGGTCCAGGCCCTCAA 24132 Query 108053 GATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCG 108112 | | ||||| || |||||||||||||||| |||||||| || ||||| | || Sbjct 24131 GCTATTGAATGGGCAGAACAGTATGGAGTCAGAGGTACCGCCTACACACAAAACATCCCG 24072 Query 108113 CTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCC 108172 ||||||||| | ||||||||||| |||||| || || ||| |||||| |||| ||| Sbjct 24071 CTGGAAATATCACTATGAGGTGAGGGACACATTGCACATAACCGGCAAGAGGAAGACCCC 24012 Query 108173 TCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTT 108232 |||||| |||| | |||||||||| ||||||||||| | ||||||||||| | ||| Sbjct 24011 TCCCCCGAATAACATGACCATGTTCACTGGGAATGCCTACATGGTGGCCTCTCGGGACTT 23952 Query 108233 TGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACAC 108292 || ||||||| ||| | || | ||| ||||| ||| | |||||||| |||||||| Sbjct 23951 CATCGAACATGTATTAAGCGACTCCAAAGCCCAACAGCTGATCGAATGGGTAAAAGACAC 23892 Query 108293 CTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTC 108352 |||||||||||| || ||||| ||||||||||| |||||||| || ||||||||||| || Sbjct 23891 CTATAGCCCCGATGAGCACCTTTGGGCCACCCTCCAGCGTGCCCCATGGATGCCTGGATC 23832 Query 108353 TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAA 108412 | ||| |||| ||||| | || |||||||||||| | ||||| ||||| ||| Sbjct 23831 GGCTCCCTTGCACCGCAAGTTTGACCTCTCAGACATGAGGTCTATCGCGAGGCTAACCAA 23772 Query 108413 GTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAAT 108472 ||||||| ||||||||||||| || ||||| ||||| |||| ||||| || || Sbjct 23771 GTGGCAGGACCACGAGGGAGACATCGAGGCCGGGGCACCTTACACACCGTGCTCAGGGAT 23712 Query 108473 CCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCA 108532 || | | |||| |||| ||||| ||| | || |||||| ||||||| || |||||||| Sbjct 23711 GCACCAGCGGGCTGTCTGTATTTATGGGTCTGGAGACCTGCACTGGATACTTCAGAACCA 23652 Query 108533 TCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGA 108592 ||||||||||| |||||||||||||| | |||||||||||| || || ||||| |||| Sbjct 23651 ACACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGTGTCTAGA 23592 Query 108593 AGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 ||| || ||||||| ||||||||||||||||||||||| |||| Sbjct 23591 AGAATATTTACGTCACAAGGCCATCTATGGGACTGAACTGTGAG 23548 >SEQ42930 Length=93363 Score = 150 bits (166), Expect = 1e-31 Identities = 582/893 (65%), Gaps = 45/893 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || ||| || ||||| || || || ||||| ||| | ||| Sbjct 30712 CCCCTTAGTAAAGAAGAGGCAGGCTTTCCAATTGCATATTCCATAGTGGTTCATCATAAG 30771 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT--ATGCCCCTCAGAACATATACTGTG 107805 ||||||| |||| |||| ||| | ||| | | |||||| ||||| | ||||| Sbjct 30772 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCC--CAGAATTTCTACTGCA 30829 Query 107806 TCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 |||| ||||| ||| | || | || || || || || |||| |||| Sbjct 30830 TCCATGTGGACAAGAAAGCAGAGGAATCCTTTTTAGCCGCCGTGGTGGGCATTGCATCCT 30889 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 ||||| |||||||| ||||||| |||||| || ||||||||||||||| Sbjct 30890 GCTTCGATAATGTCTTTGTGGCCAGCCAGTTGGAGAATGTTGTTTATGCCTCCTGGAGTC 30949 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAA 107983 | || || |||||||| ||||| ||| | ||| | || |||| | | ||| | ||||| Sbjct 30950 GGGTTCAGGCTGACCTCAACTGCATGAAGGACCT-CTACAGA-ATGAATGCAAACTGGAA 31007 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 |||||| | ||| || || | || ||||| || || ||||| || || ||| Sbjct 31008 GTACTTGATTAATCTTTGTGGTATGGATTTCCCTATTAAAACCAACCTGGAAATTGTCAG 31067 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGTC 108100 | |||||| || | ||| | |||| |||| ||| || | ||| | | Sbjct 31068 GAAGCTCAAGTCATTCATAGGTGAAAACAACCTGGAAACTGAGAAGATGCCTCCCAA--- 31124 Query 108101 CaaaaaaaaTCGCTGGAAATACCG-----CTA----TGAGGTGA--CAGAC--ACACTGT 108147 ||| || | | |||||| | || ||| ||| | || | ||| |||||| Sbjct 31125 CAAGGAAGAAAGATGGAAAAAGCGGCACACTATTGTTGATGGGAAGCTGACTAACACTG- 31183 Query 108148 ACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATG 108207 ||| | || | | ||| || || | || | || | || |||| | | Sbjct 31184 ----GGGTAGCCAAAT--CGCAGCCT-CCACTCAAAACT--CCTCTTTTTTCAGGCAGCG 31234 Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAA 108266 |||| ||||||| | | | | | ||| ||||| |||| || || |||| || Sbjct 31235 CCTACTTTGTGGTCAGTAGGGAATATGTAGGCCATGTGCTAGAAAATGAAAATATCCAAA 31294 Query 108267 AGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTT 108326 || | | ||||||| | ||||| || ||||| ||||| ||| |||||||| | Sbjct 31295 AG-TTTATGGAATGGGCGCAGGACACATACAGCCCAGACGAGTTCCTTTGGGCCACTATC 31353 Query 108327 CAGCGTGCTCCGTGGA-TGCCTGGCTCT-GTTCCTAGCCA-CCCCAAGTATCACATCTCA 108383 ||||| | ||| || | | ||||| ||| | ||| ||| | |||||| || | || Sbjct 31354 CAGCG-GATCCCTGAAGTCCCTGGTTCTCGCCCCT--CCAGCTATAAGTATGACTTGTCT 31410 Query 108384 GACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATG 108443 ||||||| ||| |||| ||| | ||||||||||||||| ||| || || || || Sbjct 31411 GACATGAATGCTGTCGCGAGGTTTGTCAAGTGGCAGTACTTCGAAGGCGACGTTTCCAGA 31470 Query 108444 GGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCC 108503 || || ||||| | || ||| |||| |||| | | || | ||| | | ||| || Sbjct 31471 GGCGCTCCTTACCCCCCGTGCAGTGGAGTCCACGTGCGCTCCGTGTGCGTCTTCGGAGCG 31530 Query 108504 GGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 || ||| || ||||| || | || || ||||| || || |||||||| || Sbjct 31531 GGTGACTTGAGATGGATGCTGCGCAAACACCACCTTTTTGCCAACAAGTTCGA 31583 >SEQ55167 Length=188648 Score = 87.8 bits (96), Expect = 1e-12 Identities = 172/252 (68%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| ||||| | ||||| || || ||||| || | | | ||||| ||||||| Sbjct 67453 ATGCCCC--AGAACGTCTACTGCGTGCATGTGGACAGGAGGGCGACGGAGACCTTCAAAG 67510 Query 107842 AGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCC 107901 ||||| || | | ||| |||||||||| |||| ||||| |||| ||| | Sbjct 67511 GTGCGGTGCAGCAGTTGCTAAACTGTTTCCCCAATGCCTTCCTGGCCTCTAAGATGGAGC 67570 Query 107902 CGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG- 107960 ||||||| |||| || ||| | | || |||||||||||||| || | || || Sbjct 67571 CGGTGGTCTATGGTGGCTTCTCCCGGCTCCAGGCTGACCTGAACTGCATCAAGGATCTGG 67630 Query 107961 ----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCC 108016 |||| ||| || || ||||| ||| | || || || ||||| |||||||| Sbjct 67631 TGGCCTCC-GAG----GTTCCCTGGAAATACGTTCTCAACACCTGCGGCCAGGACTTCCC 67685 Query 108017 CATAAAGACCAA 108028 | | || ||||| Sbjct 67686 CCTGAAAACCAA 67697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347859513091398