Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value SEQ81609 104 2e-17 SEQ32083 87.8 2e-12 SEQ18817 87.8 2e-12 >SEQ81609 Length=287 Score = 104 bits (114), Expect = 2e-17 Identities = 184/261 (70%), Gaps = 13/261 (5%) Strand=Plus/Minus Query 14476 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAA 14535 |||| |||||| ||| | |||| ||||| || || |||||||| || || || Sbjct 259 GTATCTATCAA-AAGCGA---ATACGTTTCACTATGAATATTTTCCATCATGATTTGGAA 204 Query 14536 ACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAAT 14594 |||||| ||| || ||||||| | |||| || || | | ||||| | || || | || Sbjct 203 ACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATTAACAAAAT-TCTCAGCAAGAT 145 Query 14595 TTTCATTAACTATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTA 14652 |||||||||| || || || |||||| ||||| || |||||||||| |||||||| Sbjct 144 TTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAAGAATATGTTTT--ATAAAGTA 87 Query 14653 TTGCTCTTCATTGCTGA---GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14709 |||| |||| | | || ||||| || |||||| | || | || | ||| Sbjct 86 ACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAATCTTGTGACAAGTCAATTTC 27 Query 14710 ATCAACTGTCCAAAAACTAGC 14730 ||| |||||||||||||||| Sbjct 26 TTCAGCTGTCCAAAAACTAGC 6 >SEQ32083 Length=112626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | || |||||||||||||||||||||||||| || || || Sbjct 103729 AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 103788 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 ||| ||||| ||||| | || |||| Sbjct 103789 AAAGCCATAGAAACAACGGGCCTCTG 103814 >SEQ18817 Length=114269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| ||| ||||||||| |||||||| || ||||| ||||| | ||| || |||||| Sbjct 106841 TGATACTCAGAAACTCTTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 106900 Query 13976 ATAAAATCAAATGGATTT 13993 ||||||||||| |||||| Sbjct 106901 ATAAAATCAAAGGGATTT 106918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481764210760360