Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value SEQ23565 116 3e-21 SEQ43829 95.1 9e-15 SEQ37766 84.2 2e-11 SEQ23137 84.2 2e-11 >SEQ23565 Length=11847 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| ||| || || || ||||| || ||||||||||||| | Sbjct 9049 CCACCCCTGAGGCGAAGGACCAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 9108 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||||||| |||| || || || || || ||| Sbjct 9109 AGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 9168 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | | |||||| | ||| ||||||| ||||||| Sbjct 9169 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 9228 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| |||| || || ||||| || ||||| Sbjct 9229 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9275 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || || ||||| || ||||||||||||| || || | ||| Sbjct 9747 AAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 9806 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || ||||||||| |||| || || || || || ||| | ||||||||| || Sbjct 9807 TTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 9866 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | |||||| | ||| ||||||| ||||||| || | ||||||| | Sbjct 9867 CTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGT 9926 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| || || || ||||| || || || |||||| Sbjct 9927 TTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 9960 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || || ||||| || ||||||||||||| || || | ||| Sbjct 9291 AAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 9350 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || ||||||||| |||| || || || || || ||| | ||||||||| || Sbjct 9351 TTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 9410 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | |||||| | ||| ||||||| ||||||| || | ||||||| | Sbjct 9411 CTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 9470 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 9471 CTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9503 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || || ||||| || ||||||||||||| || || | ||| Sbjct 9519 AAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 9578 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || ||||||||| |||| || || || || || ||| | ||||||||| || Sbjct 9579 TTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 9638 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | |||||| | ||| ||||||| ||||||| || | ||||||| | Sbjct 9639 CTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 9698 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 9699 CTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9731 >SEQ43829 Length=74093 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||||| || || | |||| Sbjct 42258 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 42199 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||| || Sbjct 42198 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 42139 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| |||||| || | ||||||| | Sbjct 42138 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 42079 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || || || ||||||||||| Sbjct 42078 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 42044 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||||| || || | |||| Sbjct 42486 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 42427 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||| || Sbjct 42426 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 42367 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| ||||||| || | ||||||| | Sbjct 42366 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTC 42307 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || ||||| ||||| Sbjct 42306 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 42275 >SEQ37766 Length=173039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| || || | ||||| || || || ||||||||||||||||| | | Sbjct 157072 CCACCACGGAGTCTTAGCACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 157131 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA----TAAGTCTTTGTTGATCCAC 18214 | || | | |||||||| || || || ||| ||| | ||||| || ||||| Sbjct 157132 AAAGTATGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAGG 157191 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 || | ||||||||||| || | | |||| || | | | | |||||| ||| || Sbjct 157192 AGGAATTCCTTCCTTATCCTGGATCT-TGGCTTTACATTTTCTATAGTGTCCGAGGGTTC 157250 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | |||||| | || || |||| || || |||||||| ||||| || Sbjct 157251 AACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 157304 >SEQ23137 Length=3047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 5 TTCCTTTTCTTAGCACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGA 64 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| || || || ||| |||| ||||| Sbjct 65 ATGTTGTAGTCAGACAAAGTAGGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTC 124 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | |||| Sbjct 125 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTG 184 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | |||||| | || || |||| || || |||||||| ||| Sbjct 185 TCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGC 244 Query 18324 ATTTT 18328 || || Sbjct 245 ATCTT 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378898193390115