Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value SEQ13259 120 3e-22 SEQ37766 107 2e-18 SEQ23565 107 2e-18 SEQ23137 104 2e-17 SEQ43829 102 7e-17 SEQ28820 102 7e-17 SEQ35906 91.5 1e-13 SEQ11330 91.5 1e-13 SEQ31259 87.8 2e-12 seq1037 84.2 2e-11 >SEQ13259 Length=38172 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| || ||| |||||||| || || || || || || ||||| ||||| || || Sbjct 17278 ACCTCATCCTTGCTGGTGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTC 17219 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| ||| Sbjct 17218 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTG 17159 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||| ||||| ||||| || Sbjct 17158 CCCGTCTCTGTCTGAGACTCAATGATGGC 17130 >SEQ37766 Length=173039 Score = 107 bits (118), Expect = 2e-18 Identities = 162/226 (72%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| ||||| || || || ||||| |||| |||||||| Sbjct 157304 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTTGAACCC 157245 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | |||| || || | ||| | ||| |||||||| | || || || Sbjct 157244 TCGGACACTATAGAAAATGTAAAGCCAAGA-TCCAGGATAAGGAAGGAATTCCTCCTGAT 157186 Query 31310 CAGCAGCGTCTAA----TATTCGCTGGCAAACAGTTGGAAGACT-CTATGACTATGAGCG 31364 |||||| | || | | || ||||| || ||| ||||||| | || ||| || | Sbjct 157185 CAGCAGAGACTGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCAT-ACTTTGTCTG 157127 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | || ||||||||||| || || || |||||||| || || ||||| Sbjct 157126 ACTACAACATTCAAAAGGAGTCTACCCTTCATCTTGTGCTAAGACT 157081 >SEQ23565 Length=11847 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||||||| || |||||| | || || || || Sbjct 9275 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 9216 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 9215 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCCCCTGACCA 9157 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || ||| || || Sbjct 9156 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 9097 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || ||||| || ||||| ||| | || ||||| || Sbjct 9096 CATCCAGAAAGAGTCCACTCTACACCTGGTCCTTCGCCTCAGGGGTGG 9049 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||||||| || |||||| | || || || || Sbjct 9503 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 9444 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 9443 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCCCCTGACCA 9385 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || ||| || || Sbjct 9384 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 9325 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || ||||| || ||||| ||| | || || || || Sbjct 9324 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGAGGTGG 9277 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||||||| || |||||| | || || || || Sbjct 9731 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 9672 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 9671 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCCCCTGACCA 9613 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || ||| || || Sbjct 9612 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 9553 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || ||||| || ||||| ||| | || || || || Sbjct 9552 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGAGGTGG 9505 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || | || || ||||| |||||| | || || || || Sbjct 9959 ATGCAGATCTTCGTGAAAACCTTAACTGGTAAAACCATCACCCTAGAGGTCGAGCCCAGT 9900 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 9899 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCCCCTGACCA 9841 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || ||| || || Sbjct 9840 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 9781 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || ||||| || ||||| ||| | || || || || Sbjct 9780 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGAGGTGG 9733 >SEQ23137 Length=3047 Score = 104 bits (114), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| ||||| || || || ||||| |||| |||||||| Sbjct 249 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTTGAACCC 190 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | |||| || || | || ||| |||||||| | || || || Sbjct 189 TCAGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 130 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGAT 31366 |||||| | || || | ||||| || ||| ||||||| | ||| || || || Sbjct 129 CAGCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATGGCCCTA---CTTTGTCTGAC 73 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| || || || |||||||| || | ||||| Sbjct 72 TACAACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACT 29 >SEQ43829 Length=74093 Score = 102 bits (112), Expect = 7e-17 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| |||||||| ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 42042 TCAAA-ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAG 42100 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | || || | || |||||||||||| | || || Sbjct 42101 CCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCT 42160 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| || || ||| Sbjct 42161 GACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGAC 42220 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || ||||| || || ||||| || | ||||||||||| Sbjct 42221 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGCGG 42273 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 42274 CATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCAG 42333 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || |||||||||||| | || || ||||| Sbjct 42334 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCA 42393 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || ||| || || Sbjct 42394 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 42453 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || ||||| || || ||||| || | |||||||| || Sbjct 42454 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGTGG 42501 >SEQ28820 Length=113666 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| |||| || || || ||||| |||| |||||||| Sbjct 62480 AAGATGCAGATTTTTGTGAAGACCCTGATGGGGAAGACCATCACGCTCGAGGTTGAACCC 62421 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | |||| || || | || ||| |||||||| | || || || Sbjct 62420 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 62361 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || ||||| || ||| ||||||| ||| || || || Sbjct 62360 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 62301 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || || |||||||| || | ||||| Sbjct 62300 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACT 62260 >SEQ35906 Length=62346 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| || || || || || ||||| |||| |||||||| Sbjct 33246 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACACTCGAGGTTGAACCC 33305 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||| || || | || ||| |||||||| | || || || Sbjct 33306 TCGGACACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 33365 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT-CTATGACTATGAGCGATTA 31368 | |||| | || || || ||||| || ||| ||||||| | || || || || || Sbjct 33366 CGGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTG-CTTTGTCTGACTA 33424 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || || |||||||| || | ||||| Sbjct 33425 CAACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 33466 >SEQ11330 Length=6390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 5946 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTTGAGCCC 6005 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | || ||| |||||||| | || || ||| Sbjct 6006 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACGAGGAAGGCATCCCACCTGAC 6065 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || |||||||||||||| ||| |||| || Sbjct 6066 CAGCAGAGGCTGATATTCGCTGGCAAGCAGCTGGAGGA 6103 >SEQ31259 Length=129631 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || |||| || || ||||| |||| |||||||| || Sbjct 129446 ATGCAGATTTTTGTGAAGACCCTTACAGAGAAGACCATCACGCTCGAGGTTGAACCCTCG 129387 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | || || |||||||| | || || || ||| Sbjct 129386 GACACTACAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAG 129327 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| ||||||| ||| || || || ||| Sbjct 129326 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 129267 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| | || || |||||||| || | ||||| Sbjct 129266 ATTCAAAAGCAGTCTACCCTTCATCTTGTGTTGAGACT 129229 >seq1037 Length=126922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| || || || || || ||||| | || |||||| | Sbjct 82408 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAATCC 82467 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | |||| || || | || ||| |||||| | | | || || Sbjct 82468 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAAGAATATCTCCTGAT 82527 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || ||||| || ||| ||||||| ||| || || || Sbjct 82528 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 82587 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || || |||||||| || | ||||| Sbjct 82588 AACATTCAAAAGGAGTCTACCCTTCATCTTGTTTTGAGACT 82628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445229101041840