Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value SEQ81609 125 9e-24 SEQ32083 114 2e-20 SEQ13259 113 6e-20 SEQ18817 102 1e-16 SEQ34635 89.7 6e-13 >SEQ81609 Length=287 Score = 125 bits (138), Expect = 9e-24 Identities = 195/274 (71%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 33830 TTTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33889 |||||| || ||||| ||||||||||| |||||||| |||| |||| |||||| Sbjct 284 TTTTTCGTTTTCGTCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAAT 225 Query 33890 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 33949 ||||| || || || || || |||||| || |||| |||| | |||||||| | Sbjct 224 ATTTTCCATCATGATTTGGAAACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATT 165 Query 33950 A-CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 | |||||| | | || | ||||||||| || ||||| || ||||| ||||| || | Sbjct 164 AACAAAATTCT-CAGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAA 106 Query 34009 ATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGT--TTATTCCAATCATTGATAT 34065 | |||||||||||| || || || | | | | | |||||||| ||||| | || Sbjct 105 GAATATGTTTTATAAAGTAACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAAT 46 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 ||| || | || | |||||| |||||||||| Sbjct 45 CTTGTGACAAGTCAATTTCTTCAGCTGTCCAAAA 12 >SEQ32083 Length=112626 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | || || |||||||| || |||||||| || || ||||| | Sbjct 102557 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGTCCCCGCTTCT 102616 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || || |||||||||||||| || || ||||||| Sbjct 102617 TGAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACCGCTGCAAAGG 102676 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 102677 CCACAACACGCTCTCC 102692 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 33230 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 33285 |||| ||| |||||| |||| || | |||| ||| ||| |||| ||||| || | Sbjct 100932 GTTTACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTTGACATCACAC 100990 Query 33286 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33345 |||| | ||||| || || || || || || || || || || |||||||| | ||| | Sbjct 100991 CCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 101050 Query 33346 TATTTTCCATGAAATCAAACGGATT 33370 ||||||||||||| ||||| ||||| Sbjct 101051 TATTTTCCATGAAGTCAAATGGATT 101075 >SEQ13259 Length=38172 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 ||||| ||||||| ||||| || || | || || || || | |||||||||||| | Sbjct 18351 GATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAACTCGCCTCCAGG 18292 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 || ||||||||||| ||||||||||||| |||||| || || ||||| ||||| ||| Sbjct 18291 GCTCCGTAATAAATCGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCGGGGCTCTCA 18232 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || || || | | | || || || || |||| ||||| || ||||| || || || Sbjct 18231 AAGGGGTACCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGC 18172 Query 62799 CTATGTCTCTTATTAGA 62815 | || | ||||| || Sbjct 18171 CGGTGGCGTTTATTTGA 18155 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || ||||||||||| ||||| ||||| |||||||| || ||||| || || || || | Sbjct 21442 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTCGTGTAAGGCTCAATG 21383 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||| || || |||| || ||||||||||| ||||| ||||| || || | | ||| Sbjct 21382 GACTCGTTGTTCCCCAGGATCTGAGCAGTTGAGGCAGTGGGCATCGGGGCAATAAGTAAG 21323 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 21322 CTGTTTCTTATACCATA 21306 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || |||||||| || |||||| || | || || || |||||||| | Sbjct 24150 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGGATGT 24091 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || ||||||||||| || || || || || || ||||| || | | |||| Sbjct 24090 TGAGAGACTGGCTTTGATCGATAAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 24031 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 24030 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 23980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | | || Sbjct 15334 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 15275 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 15274 CTGTTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 15215 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| ||||| Sbjct 15214 AGGCTCCAGGTAAATGGC 15197 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | |||||||| || || |||||||| | ||||||||||| ||| Sbjct 8387 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 8328 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || ||||| || | || ||||| || ||||| || || | || | ||| | | Sbjct 8327 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 8268 Query 63783 ATGTGCTGAGGTCTTTC 63799 || ||||| |||||||| Sbjct 8267 ATATGCTGTGGTCTTTC 8251 >SEQ18817 Length=114269 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || || || || || | || || ||||| || ||||| ||||| ||||| | ||| || Sbjct 113861 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 113920 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| |||||||| || ||||| ||||||||||| ||||||||||| Sbjct 113921 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 113979 >SEQ34635 Length=144713 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 188170 CGTGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGC 188229 || |||||||||||||||| ||||||||||| | ||||| |||||||| |||||||||| Sbjct 66749 CGCGCTCCTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCGTCGGCCAGCGTGC 66690 Query 188230 ACATACGAATGG 188241 |||| || |||| Sbjct 66689 ACATCCGTATGG 66678 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 188376 TCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATC 188435 |||||||| | ||||||||||| ||||||||||| |||||||| | |||||| ||||| | Sbjct 60022 TCGGATCTCTGGGCTTGATTTTTGCATTGACTTTGCACAGACACACACATCCTCTGAACC 59963 Query 188436 TGTACCTACTTT 188447 | ||||| |||| Sbjct 59962 TTTACCTGCTTT 59951 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||||||||||| |||| | | || | ||||||| | |||| |||||||| ||| Sbjct 54233 GTTACTTTCTACGATGTGTACACGGTGCTGAAAGCTTTTACTCTGACGACTGCAGTCTTT 54174 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| |||| | | ||||||||| ||||||||||||||||| ||| ||| | |||| Sbjct 54173 CTTGGCTTGACAGCCTATACTCTACAGTCAAAGAGAGATTTCAGCAAATTTGGAGCAGG 54115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629058457228560