Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value SEQ81609 136 4e-27 SEQ18817 114 1e-20 SEQ13259 84.2 2e-11 >SEQ81609 Length=287 Score = 136 bits (150), Expect = 4e-27 Identities = 198/279 (71%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 11878 TTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAAT 11937 |||||| | | ||| ||||||| |||||||| || | |||| |||| |||||| Sbjct 284 TTTTTCGTTTTCGTCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAAT 225 Query 11938 ATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCAC 11997 ||||||||| ||||| || ||||||||| || || || | | | || || || Sbjct 224 ATTTTCCATCATGATTTGGAAACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATT 165 Query 11998 ATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057 | ||| | || || | ||| ||||| || || || || || ||| ||||| || || Sbjct 164 AACAAAATTCTCAGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAAG 105 Query 12058 TATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA---TTTATCCCAATCATCTAAATC 12114 ||||||||||||||||| || || | | |||| |||| ||| |||| |||||| Sbjct 104 AATATGTTTTATAAAGTAACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAATC 45 Query 12115 TTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC 12153 || ||| || || | ||||||| | ||||||||||| || Sbjct 44 TTGTGACAAGTCAATTTCTTCAGCTGTCCAAAAACTAGC 6 >SEQ18817 Length=114269 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || || ||||| ||||| || | ||| ||||| | |||| || | Sbjct 113859 CTTCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCT 113918 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| ||||||||||||||||| ||||| ||||| ||||| || ||||| ||||| | Sbjct 113919 TTAGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 113978 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 113979 CCACCACTCTTTCCCC 113994 >SEQ13259 Length=38172 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA-TT 38471 || || || || || | |||||||| ||||| | ||||| | || || || || || Sbjct 8387 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGA-AAGTAGGTT 8329 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 |||||||| ||| || |||| ||||| | |||||| || | ||| |||||||| || Sbjct 8328 GTATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAG 8269 Query 38532 CATATGTTGTGGTCTTTC 38549 |||||| ||||||||||| Sbjct 8268 CATATGCTGTGGTCTTTC 8251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467960069488880