Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value SEQ34635 163 4e-35 SEQ32083 123 3e-23 SEQ81609 120 4e-22 SEQ18817 107 3e-18 SEQ13259 107 3e-18 >SEQ34635 Length=144713 Score = 163 bits (180), Expect = 4e-35 Identities = 153/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | |||||| || | ||| || |||| ||||||||||| ||||| Sbjct 52361 TTACTTTTTATTAACTGCTTCCAGAAACCTTAATAGGTGCAGGAACAGATTGACAATATC 52420 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||||| | |||| | ||||||||||| ||||| |||||||| || || || || || Sbjct 52421 CAGGTAGAGACTGATGGCAGCTAACACATACTCTTCTGGCGAGAGTTTGTGCATCAGAGA 52480 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| || |||||||| ||||| |||||||| | |||||| || | || | || |||||| Sbjct 52481 GTGTGTATCATAGATGATGAAGCCGCAGAAAAGAAGGGCGCCTAGAGACGCCAAGACCAG 52540 Query 9407 CTCCACTGTTTCACT 9421 ||||||||||| || Sbjct 52541 GTCCACTGTTTCGCT 52555 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||||||||||||||| ||||||||||| || |||| ||||| Sbjct 54115 CCTGCTCCAAATTTGCTGAAATCTCTCTTTGACTGTAGAGTATAGGCTGTCAAGCCAAGA 54174 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||| ||||| | ||||||| || || | |||||| ||||||||||| Sbjct 54175 AAGACTGCAGTCGTCAGAGTAAAAGCTTTCAGCACCGTGTACACATCGTAGAAAGTAAC 54233 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| |||||||| ||||||| ||||||||||| ||||||| Sbjct 66678 CCATACGGATGTGCACGCTGGCCGACGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 66737 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 ||||||||| || |||| || Sbjct 66738 TGGAGGAGCGCGGGTAGCGG 66757 >SEQ32083 Length=112626 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | || ||||||||||| || |||||||| || || ||||| | Sbjct 102557 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGTCCCCGCTTCT 102616 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||| ||||| |||||||| || || ||||||| Sbjct 102617 TGAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACCGCTGCAAAGG 102676 Query 36300 CAATAAGTCTCTCTCC 36315 | | || | |||||| Sbjct 102677 CCACAACACGCTCTCC 102692 >SEQ81609 Length=287 Score = 120 bits (132), Expect = 4e-22 Identities = 194/274 (71%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 36406 TTTTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 36465 |||||| || ||||| ||||| ||||| |||||||| |||| |||| |||||| Sbjct 284 TTTTTCGTTTTCGTCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAAT 225 Query 36466 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 36525 ||||| || ||||| || || |||||| || |||| |||| | || ||||| | Sbjct 224 ATTTTCCATCATGATTTGGAAACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATT 165 Query 36526 A-CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584 | |||||| | | || | ||||||||| || |||||||| ||||| ||||| || | Sbjct 164 AACAAAATTCT-CAGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAA 106 Query 36585 ATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGT--TTATTCCAATCATTGATAT 36641 | |||||||||||| || || | | | | | | |||||||| ||||| | || Sbjct 105 GAATATGTTTTATAAAGTAACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAAT 46 Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675 ||| || | || | |||||| |||||||||| Sbjct 45 CTTGTGACAAGTCAATTTCTTCAGCTGTCCAAAA 12 >SEQ18817 Length=114269 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || || || || | || || ||||| || ||||| ||||| ||||| | ||| || Sbjct 113861 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 113920 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | |||||||||||||| ||||||||||||||||| || |||||||| Sbjct 113921 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 113979 >SEQ13259 Length=38172 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 ||||| ||||||| || || || || | || || || || |||||||||||||| | Sbjct 18351 GATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAACTCGCCTCCAGG 18292 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 || ||||||||||| ||||| ||||||| |||||| || || ||||| |||| ||| Sbjct 18291 GCTCCGTAATAAATCGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCGGGGCTCTCA 18232 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || || || | | | || || || ||||||| ||||| || ||||| || || || Sbjct 18231 AAGGGGTACCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGC 18172 Query 65592 CTATGTCTCTTATTAGA 65608 | || | ||||| || Sbjct 18171 CGGTGGCGTTTATTTGA 18155 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || || |||||||| ||||| ||||| |||||||| || ||||| || || || || | Sbjct 21442 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTCGTGTAAGGCTCAATG 21383 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||| || || |||| || ||||||||||| ||||| ||||| || || | | ||| Sbjct 21382 GACTCGTTGTTCCCCAGGATCTGAGCAGTTGAGGCAGTGGGCATCGGGGCAATAAGTAAG 21323 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 21322 CTGTTTCTTATACCATA 21306 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || |||||||| || |||||| || | || || || |||||||| | Sbjct 24150 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGGATGT 24091 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || ||||||||||| || || || || || || ||||| || | | |||| Sbjct 24090 TGAGAGACTGGCTTTGATCGATAAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 24031 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 24030 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 23980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| |||||||| ||||||||||| || | || | ||| | || || Sbjct 15334 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 15275 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 15274 CTGTTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 15215 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| ||||| Sbjct 15214 AGGCTCCAGGTAAATGGC 15197 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | |||||||| || || |||||||| | ||||||||||| ||| Sbjct 8387 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 8328 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || ||||| || | || ||||| || ||||| || || | || | ||| | | Sbjct 8327 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 8268 Query 66576 ATGTGCTGAGGTCTTTC 66592 || ||||| |||||||| Sbjct 8267 ATATGCTGTGGTCTTTC 8251 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || | || || | | Sbjct 3729 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCGTGCTGCCAGGA 3670 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | || || | || || || | ||||| ||||| ||||||| Sbjct 3669 TGGCATAGTCAGGGTGCTTCGTGGTTAAGGTTGCCGCCGTCTCGGCAGCCAGGGTGTCCA 3610 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || ||||| |||| | |||||||| || ||||| Sbjct 3609 GCTCCACTGTGGTCACTCCGCTATACAGGCCTTGGATTACTTTCAT 3564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657379479642680