Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value SEQ38160 127 2e-24 SEQ28171 104 2e-17 >SEQ38160 Length=80719 Score = 127 bits (140), Expect = 2e-24 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 ||||||||||| ||| || |||| || || || |||||||||||||||||||| || || Sbjct 57038 CAGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGG 57097 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || || ||||| || | ||||||||||| |||||||| |||||||| || | Sbjct 57098 CACGCCTAGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCAC 57157 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||| || |||| ||| | | || |||||||| || |||||| Sbjct 57158 CACATAGAACTCACAGAGGGCATGGCAAGGAGGCAGTGCCATC 57200 >SEQ28171 Length=118966 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 21024 AGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTAC 21083 ||||| |||||||| |||||||| || || || || ||||| || | ||||||||||| Sbjct 106815 AGGGCATAGCTGGCAATGTTAAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTAA 106756 Query 21084 AGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGG 21143 |||||||| |||||||| || |||| || |||| ||| | | || |||||||| Sbjct 106755 AGCTGGCAAGACAGCTCTCCATTCACCACATAGAACTCACAGAGGGCATGGCAAGGAGGC 106696 Query 21144 AGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGAT 21190 || |||||| | | || || |||||||| || ||| | | ||| Sbjct 106695 AGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGAT 106649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427273275906960