Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value SEQ32083 84.2 2e-11 SEQ18817 82.4 5e-11 >SEQ32083 Length=112626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || ||||| || | || ||||| || ||||| | |||||||||| Sbjct 102679 TGGCCTTTGCAGCGGTGGAAGGAATCTTCTTCTCTGGCTCTTTTGCATCGATATTCTGGC 102620 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| || || ||||| || | |||||||||| ||| | |||||| | |||| Sbjct 102619 TCAAGAAGCGGGGACTGATGCCCGGCCTTACGTTTTCCAATGAGCTTATTAGCAGAGACG 102560 Query 22868 A 22868 | Sbjct 102559 A 102559 >SEQ18817 Length=114269 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| | | || ||||| |||||||| || |||||||||| Sbjct 113981 TGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCTGCTATATTCTGGC 113922 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| | |||||||| || | | ||||| || ||| |||| ||| | || | Sbjct 113921 TAAAGAAGAGAGGCCTCATGCCTGGACTTACCTTTTCAAATGAGCTGATCAGCAGGGATG 113862 Query 22868 AAG 22870 ||| Sbjct 113861 AAG 113859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355814952826081