Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value SEQ81609 104 2e-17 SEQ18817 93.3 4e-14 SEQ32083 82.4 7e-11 >SEQ81609 Length=287 Score = 104 bits (114), Expect = 2e-17 Identities = 184/261 (70%), Gaps = 13/261 (5%) Strand=Plus/Minus Query 14144 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAA 14203 |||| |||||| ||| | |||| ||||| || || |||||||| || || || Sbjct 259 GTATCTATCAA-AAGCGA---ATACGTTTCACTATGAATATTTTCCATCATGATTTGGAA 204 Query 14204 ACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG-AGTAAAATCTTTCGGCCAAAT 14262 |||||| || || ||||||| | |||| ||||| | ||||| | || || | || Sbjct 203 ACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATTAACAAAAT-TCTCAGCAAGAT 145 Query 14263 TTTCATTAACTATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTA 14320 |||||||||| || || || |||||| ||||| || |||||||||| |||||||| Sbjct 144 TTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAAGAATATGTTTT--ATAAAGTA 87 Query 14321 TTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTC 14377 |||| |||| || | || ||||| || |||||| | || | || | ||| Sbjct 86 ACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAATCTTGTGACAAGTCAATTTC 27 Query 14378 ATCAACTGTCCAAAAACTAGC 14398 ||| |||||||||||||||| Sbjct 26 TTCAGCTGTCCAAAAACTAGC 6 >SEQ18817 Length=114269 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 ||||| || || || || || |||||||| || | ||| ||||| | |||| || ||| Sbjct 113861 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 113920 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||| ||||| ||||||||||| || || ||||| ||||| || || |||||||| || Sbjct 113921 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 113979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| ||| ||||||||| |||||||| || ||||| ||||| | ||| || |||||| Sbjct 106841 TGATACTCAGAAACTCTTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 106900 Query 13644 ATAAAATCAAATGGATTT 13661 ||||||||||| |||||| Sbjct 106901 ATAAAATCAAAGGGATTT 106918 >SEQ32083 Length=112626 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| || |||||||| | || |||||||||||||||||||||||||| || || || Sbjct 103729 AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 103788 Query 14201 AAAACCATAAAAGCA 14215 ||| ||||| || || Sbjct 103789 AAAGCCATAGAAACA 103803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479149765851800