Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value SEQ81609 95.1 1e-14 SEQ32083 84.2 2e-11 >SEQ81609 Length=287 Score = 95.1 bits (104), Expect = 1e-14 Identities = 182/261 (70%), Gaps = 13/261 (5%) Strand=Plus/Minus Query 13932 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAA 13991 |||| |||||| ||| | |||| ||||| || || ||||| || || || || Sbjct 259 GTATCTATCAA-AAGCGA---ATACGTTTCACTATGAATATTTTCCATCATGATTTGGAA 204 Query 13992 ACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG-AGTAAAATCTTTCTGCCAAGT 14050 |||||| ||| || ||||||| | |||| || || | ||||| | || || | | Sbjct 203 ACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATTAACAAAAT-TCTCAGCAAGAT 145 Query 14051 TTTCATTAACAATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTA 14108 |||||||||| || || || |||||| ||||| || |||||||||| |||||||| Sbjct 144 TTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAAGAATATGTTTT--ATAAAGTA 87 Query 14109 TTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14165 |||| |||| || | || ||||| || |||||| | || | || | ||| Sbjct 86 ACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAATCTTGTGACAAGTCAATTTC 27 Query 14166 ATCAACTGTCCAAAAACTAGC 14186 ||| |||||||||||||||| Sbjct 26 TTCAGCTGTCCAAAAACTAGC 6 >SEQ32083 Length=112626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || |||||||| | || ||||||||||||||||||||||| || || || || Sbjct 103729 AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 103788 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 ||| ||||| ||||| | || |||| Sbjct 103789 AAAGCCATAGAAACAACGGGCCTCTG 103814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478011938972280