Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value SEQ32083 123 3e-23 SEQ81609 111 2e-19 SEQ18817 111 2e-19 SEQ13259 109 7e-19 >SEQ32083 Length=112626 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | || ||||||||||| || |||||||| || || ||||| | Sbjct 102557 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGTCCCCGCTTCT 102616 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || ||||| |||||||||||||| || || ||||||| Sbjct 102617 TGAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACCGCTGCAAAGG 102676 Query 42207 CAATAAGTCTCTCTCC 42222 | | || | |||||| Sbjct 102677 CCACAACACGCTCTCC 102692 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/145 (75%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 41713 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 41768 |||| ||| |||||| |||| || | |||| ||| ||| |||| ||||| || | Sbjct 100932 GTTTACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTTGACATCACAC 100990 Query 41769 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATA 41828 |||| | ||||| || || || || || || || || || ||||||||||| | ||| | Sbjct 100991 CCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 101050 Query 41829 TATTTTCCATGAAATCAAACGGATT 41853 ||||||||||||| ||||| ||||| Sbjct 101051 TATTTTCCATGAAGTCAAATGGATT 101075 >SEQ81609 Length=287 Score = 111 bits (122), Expect = 2e-19 Identities = 191/274 (70%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 42313 TTTTTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 |||||| || ||||| ||||| ||||| |||||||| |||| |||| |||||| Sbjct 284 TTTTTCGTTTTCGTCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAAT 225 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 ||||| || || || || || |||||| || | || |||| | || ||||| | Sbjct 224 ATTTTCCATCATGATTTGGAAACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATT 165 Query 42433 A-CAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491 | |||||| | |||| | |||||| || || |||||||| ||||| ||||| || | Sbjct 164 AACAAAATTCT-CAGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAA 106 Query 42492 ATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---TTTATTCCAATCATTGATAT 42548 | |||||||||||| || || || |||| |||||||| ||||| | || Sbjct 105 GAATATGTTTTATAAAGTAACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAAT 46 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 ||| || | || | |||||| | |||||||| Sbjct 45 CTTGTGACAAGTCAATTTCTTCAGCTGTCCAAAA 12 >SEQ18817 Length=114269 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | || || ||||| || ||||| ||||| ||||| | ||| || Sbjct 113861 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 113920 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| |||||||||||||| ||||| ||||||||||| || |||||||| Sbjct 113921 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 113979 >SEQ13259 Length=38172 Score = 109 bits (120), Expect = 7e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432 |||||| ||||||| || || || || | | | ||| || |||||||||||||| | Sbjct 18352 TGATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAACTCGCCTCCAG 18293 Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATC 71492 ||||| |||||||| ||||| || |||| |||||| || || ||||| ||||| || Sbjct 18292 GGCTCCGTAATAAATCGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCGGGGCTCTC 18233 Query 71493 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 ||| || || | | | || || || ||||||| ||||| || ||||| || || || Sbjct 18232 AAAGGGGTACCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGG 18173 Query 71553 TCTGTGTCTCTTATTAGA 71570 | ||| | ||||| || Sbjct 18172 CCGGTGGCGTTTATTTGA 18155 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || || |||||||| ||||| ||||| |||||||| || ||||| || || || || | Sbjct 21442 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTCGTGTAAGGCTCAATG 21383 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||| || || |||| || ||||||||||| ||||| ||||| || || | | || Sbjct 21382 GACTCGTTGTTCCCCAGGATCTGAGCAGTTGAGGCAGTGGGCATCGGGGCAATAAGTAAG 21323 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 21322 CTGTTTCTTATACCAT 21307 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || |||||||| || |||||| ||| |||| || || || || || | Sbjct 24150 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGGATGT 24091 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| ||||||||||| || || || || || || ||||| || | | |||| Sbjct 24090 TGAGAGACTGGCTTTGATCGATAAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 24031 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 24030 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 23980 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| |||||||| ||||||||||| || | || ||||| | || || || Sbjct 15330 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGT 15271 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || ||||| ||||| || | || |||||| | | || || | ||||| || Sbjct 15270 TCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 15211 Query 72142 TCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 15210 TCCAGGTAAATGGC 15197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670330250754520