Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value SEQ13259 102 1e-16 >SEQ13259 Length=38172 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | ||||| |||||| || || |||||||| |||||||| Sbjct 17121 CTTTGGTATGCCATCATTGAGTCTCAGACAGAGACGGGCACCCCGTACATGCTCTACAAA 17180 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || ||||| || |||||||| | || |||| ||||||||| || ||| ||| Sbjct 17181 GATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGGACCATCAAGTGCAGCAACCTG 17240 Query 97299 TGCACGGAAATTGTAGAGTACGCC 97322 |||||||| || || |||||| || Sbjct 17241 TGCACGGAGATAGTGGAGTACACC 17264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740165973556520