Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value SEQ81609 105 6e-18 SEQ18817 102 7e-17 SEQ32083 84.2 2e-11 >SEQ81609 Length=287 Score = 105 bits (116), Expect = 6e-18 Identities = 147/198 (74%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 13402 TTTTTCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACATTTCTGAATGAA 13460 |||||| || |||| | ||||||||||||||| |||| | ||| |||| ||||| Sbjct 284 TTTTTCGTTTTCGTCTTTTACATAAGTATCTATCAA-AAGCGAATACGTTTCACTATGAA 226 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG-ATACCTGAACTTC- 13518 ||||||||||| |||||||||||||| ||| || |||| || | ||| || ||||| Sbjct 225 TATTTTCCATCATGATTTGGAAACCATAGAAAAATTTAGCTTCGGCATA-TTGCACTTCA 167 Query 13519 GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 | ||||| | || || | ||||| ||||| || ||||| ||| || ||||| || Sbjct 166 TTAACAAAAT-TCTCAGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGC 108 Query 13579 AAGTATGTGCTTAATAAA 13596 ||| || || || ||||| Sbjct 107 AAGAATATGTTTTATAAA 90 >SEQ18817 Length=114269 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 ||||||| || || || ||||| |||||||| || || || ||||| || |||| || | Sbjct 113859 CTTCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCT 113918 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 113919 TTAGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 113978 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 113979 CCACCACTCTTTCCCC 113994 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| ||| ||||||||||||| || | Sbjct 107776 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCAATGAGG 107835 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||||||||| Sbjct 107836 CCAACAGGCAAGGCTTCTGTTAAAAA 107861 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||||||| ||||| || |||||||| |||||||| ||||| |||||| Sbjct 106841 TGATACTCAGAAACTCTTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 106900 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 106901 ATAAAATCAAAGGGATTTT 106919 >SEQ32083 Length=112626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| ||| ||| | || || |||| |||| || ||||| |||||||| |||| Sbjct 100979 TTGACATCACACCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTC 101038 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 |||||| |||||||||||||| || || || ||||||| Sbjct 101039 CTTCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTT 101077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430475907732654