Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value SEQ41689 93.3 4e-14 >SEQ41689 Length=266122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGT-CGCTGTT 5373 || ||||| || || || || || | | || || || || || ||||| | | || || Sbjct 191899 ATCCGTTCACAAATGAGTTGCGCAACTCAATCACCTTTTTTTACTTCAAACTTCTCT-TT 191841 Query 5374 TCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGC 5433 ||| || ||||||||||| || || ||||| ||| ||| ||||| || || || ||||| Sbjct 191840 TCCAAAATTAAACAGCACAACACCAACATTTCCTTTGTAATCTTCCTCTATGACACCAGC 191781 Query 5434 GCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCA 5493 || || || || ||||| || | || | ||| || ||||| |||| | ||| ||||| Sbjct 191780 TCCTACATCTATGAAGTGCTTTGCAGCCAAGCCAGATCGTGGAGCTACTCTTCCATAGCA 191721 Query 5494 ACCAG 5498 |||| Sbjct 191720 CCCAG 191716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447210709652240