Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value SEQ39859 86.0 5e-12 >SEQ39859 Length=70141 Score = 86.0 bits (94), Expect = 5e-12 Identities = 176/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAG-GCACGCCACCTCTTC 5562 |||||||| || || || |||| ||| ||||| || || ||||| || | || ||||| Sbjct 42302 CCCGTGGAGCCAAAACCTCCTGTGCCCCTTTCGGTGTCATCCAGTGCTTGA-ACTTCTTC 42244 Query 5563 CACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 | || || | | || || || || || ||| | | ||| || || | ||||| Sbjct 42243 TAAGTCTGGATAAAAAATCCGTTCACAAATGAGTTGCACAACTCGATCACCTTTTTTTAC 42184 Query 5623 CTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGC 5682 || || | | | || || || |||||| | || || || || || | ||| || | Sbjct 42183 TTCAAACTTCTCTTTTCCAAAATTAAACAGCGCAACACCAACATTTCCTCTGTAATCTTC 42124 Query 5683 GTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGC 5742 ||||| || || || || || || ||||||||||| | |||| ||| || || ||||| Sbjct 42123 ATCTATGACACCAGCTCCTACATCTATGAAGTGCTTTGCAGCCAAGCCAGATCGTGGAGC 42064 Query 5743 CACGCGGCCGTAGCACCCA 5761 || | || ||||||||| Sbjct 42063 TACTCTTCCATAGCACCCA 42045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429548998322024