Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value SEQ28171 111 1e-19 SEQ38160 93.3 3e-14 >SEQ28171 Length=118966 Score = 111 bits (122), Expect = 1e-19 Identities = 146/201 (73%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 25510 TCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCC 25569 ||||||| ||| | || |||||||| ||||||||||| || || | ||||| || | Sbjct 106829 TCATGTAGGTGTGCAGGGCATAGCTGGCAATGTTAAAGGGCACACCCAGACCCATATCTC 106770 Query 25570 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATG 25629 | ||||||||||| ||||| || || |||||| | | ||| || |||| ||| | | Sbjct 106769 CT-GACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAGAACTCACAGAGG 106711 Query 25630 GTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATG 25689 | | ||| ||||| || || || ||| | ||||| ||||||||||| ||| |||| Sbjct 106710 GCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATG 106651 Query 25690 ATGCACCTGTCTTCTGGGTTG 25710 || | ||||| || || ||| Sbjct 106650 ATTCTTCTGTCATCAGGATTG 106630 >SEQ38160 Length=80719 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | ||||| Sbjct 57054 GCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCTAGACCCATA 57113 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||||| ||||| || || |||||| | | ||| || |||| ||| Sbjct 57114 T-CACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAGAACTCACA 57172 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 | || | ||| ||||| || || || ||| Sbjct 57173 GAGGGCATGGCAAGGAGGCAGTGCCATCAGG 57203 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| |||||||| |||| |||||||||||| || || || || || ||||| Sbjct 58666 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 58725 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || | | | || | || ||| | ||||| ||||||| || |||||||| | Sbjct 58726 CCCTTCCTGTC-GGGCAGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCAT 58784 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||| | || ||||| ||| || ||||| | |||||||| || Sbjct 58785 CCCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGATCC 58833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339737868910671