Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value SEQ47856 109 6e-19 >SEQ47856 Length=103108 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 10137 TCAAGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAG 10196 || |||| ||| |||| || || ||| | || |||||||||||||||||||||| |||| Sbjct 38875 TCTAGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAG 38934 Query 10197 TAATGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCG 10256 | ||||| ||||| || || || | ||| | ||| ||||| ||||||| ||||| | Sbjct 38935 TGATGCCCCAGGCAGAGAACCACGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAG 38994 Query 10257 AGAATCTAAAGACCCTAAGG 10276 |||| | |||||||| ||| Sbjct 38995 AGAAGTTGAAGACCCTCAGG 39014 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||| ||||||| |||||||||||| || || |||| | Sbjct 41069 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAATGAATTTGACATCTTCATCAACTGCA 41128 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| |||||||| || ||||| Sbjct 41129 TAGAAGCGTACATGACAATCAAAAT 41153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546719423323520