Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq4625 168 9e-37 SEQ15013 150 3e-31 >seq4625 Length=35579 Score = 168 bits (186), Expect = 9e-37 Identities = 209/286 (73%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || || | |||| |||||||| || | ||| | |||| |||| Sbjct 16268 AAGGGACAGCCCTTTACATTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATC 16209 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| || | ||||| || || ||||| || |||||||| || ||||||||| Sbjct 16208 TTAAAACCTGCTTCTCCTCCAAACGTGCTTGGCTTCCAGTACTGAGGAGAGCAGATGGGA 16149 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| |||| |||||| Sbjct 16148 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCGAAG 16089 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||||| ||||| ||||||||||||| | | | ||||| ||||| || |||||| Sbjct 16088 ATGGCGTCTGGACGAGGCTTTTCCACCAGCAGGGCAGGGTACAGCTCCATGGCATCGATG 16029 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||| ||||| | || |||| || |||||||| ||||||| Sbjct 16028 TCACCGTAGAGGGCTTTCAGCTCGGTGGCCATTTCCTTCTCTCCTG 15983 Score = 127 bits (140), Expect = 3e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691 ||||||| |||| | ||||| ||| || || || || | || || || ||||||| Sbjct 14752 TGGTCTGGAACAACCGCTCGTCCTCCCACTCGGGGTGCTCCTGCTTGAGCACGTCGCACA 14693 Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751 ||| |||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| | Sbjct 14692 CTCGGTTGTGCTCCCGCAGCCAGATAGTAGCATACATCATCAGACCCGGCACCAGGCCGA 14633 Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811 | | || || || ||||| | |||| | ||||| | | ||| || |||||||| | Sbjct 14632 AGACTTCCTGGCCCACAGCGAACCGCAGGTGCTCGGGGATGTGGGGCGGGTAGATCATCT 14573 Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTGA 9864 ||||| ||| | || | ||| || |||| || || || || | |||| Sbjct 14572 CGGCCTGGGTGTCTCTCACTGTGGGAGGGTACACCTCTCCATCGATGAGCTGA 14520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | |||||||| || || | | || ||||| || | ||| | Sbjct 12854 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATTGGCTACTGGAGGAAGGACCCTGGTA 12795 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| |||||||| ||||||||| | ||| | |||| | | ||||| | Sbjct 12794 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTCTTGTAACCATAGTGCACATTGTAAGTT 12735 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 12734 GGTGGACTGTCAATCAAATGTGATCTGGCTGAA 12702 >SEQ15013 Length=36067 Score = 150 bits (166), Expect = 3e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| ||||| || |||||||| |||| || |||||| ||| Sbjct 4336 AAGCCCACCTCACCACCGAACGTGCTCGGCTTCCAGTACTCCGGCGAACAGATGGGATTC 4395 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| |||||||||||||||||||| | ||| | || ||||| || |||||| Sbjct 4396 CCTAGGAGGCCCTTGAGGGAAAACGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATG 4455 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || |||||||| | | || | ||| ||||||| ||| |||||||| Sbjct 4456 GAGTTGGGCTGGCACTTTTCCAGGAGCAGCCCCGGGTAGAACTCCAAAGCGTCGATGTCG 4515 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || | || ||||| ||||||| ||||||| Sbjct 4516 CCATACAGCTCCTGTAACTCCGCAGCCATTTCCTCCTCTCCTG 4558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707670788488880