Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value SEQ40105 132 8e-27 SEQ28556 132 8e-27 SEQ39689 131 3e-26 SEQ40109 129 9e-26 SEQ40106 129 9e-26 SEQ40103 129 9e-26 SEQ39693 129 9e-26 SEQ39691 129 9e-26 SEQ39688 129 9e-26 SEQ39687 129 9e-26 >SEQ40105 Length=14179 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1392 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1451 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 1452 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 1511 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 1512 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1571 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || |||| || || || Sbjct 1572 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTGAAGCGCCAGGG 1631 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 1632 CCGCACGCTCTACGGCTTCGG 1652 >SEQ28556 Length=368238 Score = 132 bits (146), Expect = 8e-27 Identities = 188/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 364098 CGCCAAGCGGCACCGCAAGGTC-CTGCGGGACAACATCCAGGGCATCACCAAGCCCGCGA 364040 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 364039 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGA 363980 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 363979 CGCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGG 363920 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | || || || | || || || | Sbjct 363919 AGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 363860 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 363859 GCCGCACGCTCTACGGCTTCGG 363838 >SEQ39689 Length=85432 Score = 131 bits (144), Expect = 3e-26 Identities = 192/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 4336 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 4395 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 4396 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 4455 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 4456 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 4515 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 4516 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 4575 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||| | | | || || || || | ||| ||| Sbjct 4576 CCGCACGCTCTACGGCTTCGGCGGCTAAACTT 4607 >SEQ40109 Length=87226 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 29242 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 29183 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 29182 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 29123 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 29122 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 29063 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 29062 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 29003 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 29002 CCGCACGCTCTACGGCTTCGG 28982 >SEQ40106 Length=89972 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 5433 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 5374 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 5373 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 5314 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 5313 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 5254 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 5253 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 5194 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 5193 CCGCACGCTCTACGGCTTCGG 5173 >SEQ40103 Length=16744 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 15 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 74 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 75 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 134 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 135 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 194 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 195 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 254 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 255 CCGCACGCTCTACGGCTTCGG 275 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 15364 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 15305 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 15304 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 15245 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 15244 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 15185 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 15184 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 15125 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 15124 CCGCACGCTCTACGGCTTCGG 15104 >SEQ39693 Length=19933 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 11794 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 11853 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 11854 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 11913 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 11914 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 11973 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 11974 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 12033 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 12034 CCGCACGCTCTACGGCTTCGG 12054 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 17730 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 17671 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 17670 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 17611 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 17610 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 17551 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 17550 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 17491 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 17490 CCGCACGCTCTACGGCTTCGG 17470 >SEQ39691 Length=21236 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 9436 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 9377 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 9376 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 9317 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 9316 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 9257 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 9256 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 9197 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 9196 CCGCACGCTCTACGGCTTCGG 9176 >SEQ39688 Length=34161 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 6194 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 6135 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 6134 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 6075 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 6074 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 6015 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 6014 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 5955 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 5954 CCGCACGCTCTACGGCTTCGG 5934 >SEQ39687 Length=76520 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 65548 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 65607 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 65608 CCGCCGCCTGGCCCGGCGCGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 65667 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 65668 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 65727 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 65728 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 65787 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 65788 CCGCACGCTCTACGGCTTCGG 65808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78987036118911