Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value SEQ18817 98.7 1e-15 SEQ32083 84.2 2e-11 >SEQ18817 Length=114269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| | | ||| |||||| || ||| || ||| | | | | | Sbjct 106779 TTTAAAAATCTGCATCCAGGGTGAAGACATTAGCTGTAGTTTCTGCCATGACTGCAAATC 106838 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| ||| ||||||||| || || |||||||| || ||||| ||||| || || Sbjct 106839 GCTGATACTCAGAAACTCTTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTT 106898 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 106899 CCATAAAATCAAAGGGATTTTC 106920 >SEQ32083 Length=112626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 |||| ||| || |||||||| || | ||| ||| ||| | ||||||| | ||| Sbjct 100933 TTTACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGAACTTGACATCACACCC 100992 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | || || || | |||| || || || || |||||||||||||| | ||| ||| Sbjct 100993 ATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATA 101052 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||| || |||||||||||||| Sbjct 101053 TTTTCCATGAAGTCAAATGGATTTTC 101078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531259680019480