Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value SEQ13259 105 2e-17 SEQ18817 84.2 6e-11 >SEQ13259 Length=38172 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||| || || || || ||| Sbjct 17112 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACGGGCACCCCGTACATG 17171 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || || Sbjct 17172 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGGACCATCAAGTGC 17231 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || ||||| | || |||||| Sbjct 17232 AGCAACCTGTGCACGGAGATAGTGGAGTACACC 17264 >SEQ18817 Length=114269 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || ||||| |||||||| |||||| ||||| ||| || || |||||| Sbjct 113979 GCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCTGCTATATTCTGGCTA 113920 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619 || || | | | ||||| || || || |||||||||||| | || ||| | ||||| Sbjct 113919 AAGAAGAGAGGCCTCATGCCTGGACTTACCTTTTCAAATGAGCTGATCAGCAGGGATGA 113861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301743344505914