Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value SEQ23137 95.1 1e-14 SEQ28820 89.7 4e-13 >SEQ23137 Length=3047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| || || || ||||| || ||||| || |||| || || Sbjct 249 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTTGAACCC 190 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | | | ||||| || || ||||| ||||| | || |||| Sbjct 189 TCAGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 130 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| || | ||| || || || | ||||||| | || || | || || Sbjct 129 CAGCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATGGCCCTACTTTGTCTGACTAC 70 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| |||||||| | ||| | ||||||||| | || || || Sbjct 69 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 20 >SEQ28820 Length=113666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| || || || | ||| || ||||| || |||| || || Sbjct 62480 AAGATGCAGATTTTTGTGAAGACCCTGATGGGGAAGACCATCACGCTCGAGGTTGAACCC 62421 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | | | ||||| || || ||||| ||||| | || |||| Sbjct 62420 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 62361 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| || | ||| || || || | ||||||| | || || | || || Sbjct 62360 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 62301 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||||||| |||||||| | ||| | ||||||||| Sbjct 62300 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGA 62262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424844134003240