Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value SEQ32083 123 3e-23 SEQ81609 120 4e-22 SEQ18817 107 2e-18 SEQ13259 107 2e-18 >SEQ32083 Length=112626 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | || ||||||||||| || |||||||| || || ||||| | Sbjct 102557 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGTCCCCGCTTCT 102616 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||| ||||| |||||||| || || ||||||| Sbjct 102617 TGAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACCGCTGCAAAGG 102676 Query 32803 CAATAAGTCTCTCTCC 32818 | | || | |||||| Sbjct 102677 CCACAACACGCTCTCC 102692 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 32309 GTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA----GACATAACTC 32364 |||| ||| |||||| |||| | | |||| ||| ||| |||| ||||| || | Sbjct 100932 GTTTACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTTGACATCACAC 100990 Query 32365 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 32424 |||| | ||||| || || || || || || || || || || || ||||||| ||| | Sbjct 100991 CCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 101050 Query 32425 TATTTTCCATGAAATCGAATGGATT 32449 ||||||||||||| || |||||||| Sbjct 101051 TATTTTCCATGAAGTCAAATGGATT 101075 >SEQ81609 Length=287 Score = 120 bits (132), Expect = 4e-22 Identities = 194/274 (71%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 32909 TTTTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 32968 |||||| || ||||| ||||| ||||| |||||||| |||| |||| |||||| Sbjct 284 TTTTTCGTTTTCGTCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAAT 225 Query 32969 GTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGT 33028 ||||| || ||||| || || ||||| || |||| |||| | || ||||| | Sbjct 224 ATTTTCCATCATGATTTGGAAACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATT 165 Query 33029 A-CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 | |||||| | | || | ||||||||| || |||||||| ||||| ||||| || | Sbjct 164 AACAAAATTCT-CAGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAA 106 Query 33088 ATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGT--TTATTCCAATCATTGATAT 33144 | |||||||||||| || || || | | | | | |||||||| ||||| | || Sbjct 105 GAATATGTTTTATAAAGTAACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAAT 46 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAA 33178 ||| || | || | |||||| |||||||||| Sbjct 45 CTTGTGACAAGTCAATTTCTTCAGCTGTCCAAAA 12 >SEQ18817 Length=114269 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || || || || || | || || ||||| || ||||| ||||| ||||| | ||| || Sbjct 113861 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 113920 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | |||||||||||||| ||||||||||||||||| || |||||||| Sbjct 113921 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 113979 >SEQ13259 Length=38172 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 ||||| ||||||| || || || || | || || || || |||||||||||||| | Sbjct 18351 GATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAACTCGCCTCCAGG 18292 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 || ||||||||||| ||||| ||||||| |||||| || || ||||| |||| ||| Sbjct 18291 GCTCCGTAATAAATCGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCGGGGCTCTCA 18232 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 || || || | | | || || || ||||||| ||||| || ||||| || || || Sbjct 18231 AAGGGGTACCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGC 18172 Query 62603 CTATGTCTCTTATTAGA 62619 | || | ||||| || Sbjct 18171 CGGTGGCGTTTATTTGA 18155 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || || |||||||| ||||| ||||| |||||||| || ||||| || || || || | Sbjct 21442 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTCGTGTAAGGCTCAATG 21383 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||| || || |||| || ||||||||||| ||||| ||||| || || | | ||| Sbjct 21382 GACTCGTTGTTCCCCAGGATCTGAGCAGTTGAGGCAGTGGGCATCGGGGCAATAAGTAAG 21323 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 21322 CTGTTTCTTATACCATA 21306 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || |||||||| || |||||| || | || || || |||||||| | Sbjct 24150 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGGATGT 24091 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||| || ||||||||||| || || || || || || ||||| || | || |||| Sbjct 24090 TGAGAGACTGGCTTTGATCGATAAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 24031 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 24030 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 23980 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 15334 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 15275 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 15274 CTGTTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 15215 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| ||||| Sbjct 15214 AGGCTCCAGGTAAATGGC 15197 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | |||||||| || || |||||||| | ||||||||||| ||| Sbjct 8387 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 8328 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || ||||| || | || ||||| || ||||| || || | || | ||| | | Sbjct 8327 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 8268 Query 63587 ATGTGCTGAGGTCTTTC 63603 || ||||| |||||||| Sbjct 8267 ATATGCTGTGGTCTTTC 8251 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || | || || || | Sbjct 3729 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCGTGCTGCCAGGA 3670 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | || || | || || || | ||||| ||||| ||||||| Sbjct 3669 TGGCATAGTCAGGGTGCTTCGTGGTTAAGGTTGCCGCCGTCTCGGCAGCCAGGGTGTCCA 3610 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || || |||| | |||||||| || ||||| Sbjct 3609 GCTCCACTGTGGTCACTCCGCTATACAGGCCTTGGATTACTTTCAT 3564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632868259589200