Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value SEQ81609 131 2e-25 SEQ32083 91.5 2e-13 >SEQ81609 Length=287 Score = 131 bits (144), Expect = 2e-25 Identities = 183/252 (73%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 93365 TATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAAT 93424 || ||||| || || || |||||| ||||| ||| | ||| ||||| |||||||| Sbjct 262 TAAGTATCTATCAAAAGCGAATACGTTTCACTATGAATATTTTCCATCATGATTTGGAAA 203 Query 93425 CCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATT 93483 || |||||| || ||||||| | |||||||| || | ||||| |||| | ||||| Sbjct 202 CCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATTAACAAAAT-TCTCAGCAAGATT 144 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 |||||| || || || || || ||||| ||||| || | ||||| |||||||| | Sbjct 143 TTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAAGAATATGTTTTATAAAGTAACG 84 Query 93544 CTCATCATC-TTTAA--GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTC 93600 ||||||||| ||||| |||| ||| || || ||||| ||| | || | |||||| Sbjct 83 CTCATCATCATTTAACTTATTATTCCAGTCATTTAAATCTTGTGACAAGTCAATTTCTTC 24 Query 93601 GACAGTCCAAAA 93612 | |||||||| Sbjct 23 AGCTGTCCAAAA 12 >SEQ32083 Length=112626 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTT 93174 ||||||| || || || ||||||| || || | || || | |||||| || ||||| Sbjct 102559 TCGTCTC-TGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGTCCCCGCTTCTT 102617 Query 93175 GAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGC 93234 |||||| ||||| || |||||| ||||| || || || |||||||| |||||||| || Sbjct 102618 GAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACCGCTGCAAAGGC 102677 Query 93235 CACAATACGTTC 93246 ||||| ||| || Sbjct 102678 CACAACACGCTC 102689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556189594795480