Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value SEQ43829 98.7 8e-16 SEQ13217 98.7 8e-16 SEQ35906 89.7 4e-13 SEQ28820 89.7 4e-13 seq1037 89.7 4e-13 SEQ23137 87.8 2e-12 >SEQ43829 Length=74093 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || | ||||| || || |||| | || ||||| Sbjct 42041 GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAG 42100 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || |||||||| |||||||| || Sbjct 42101 CCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCT 42160 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||||||||| ||| | || ||| ||||||| | ||||| Sbjct 42161 GACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGAC 42220 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || || || || ||| Sbjct 42221 TACAACATCCAGAAGGAGTCGACC 42244 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| | || || || ||| Sbjct 42275 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCAGT 42334 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || |||||||| |||||||| || || || Sbjct 42335 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 42394 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 42395 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 42454 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 42455 ATCCAGAAGGAGTCGACC 42472 >SEQ13217 Length=170878 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | || || || || |||| ||||| || ||| || Sbjct 167307 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAATCC 167248 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || || || ||||| ||||| || ||||| || ||| Sbjct 167247 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGAT 167188 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || | ||| || || ||| | || ||| ||| || | || || ||| Sbjct 167187 CAGCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATAGCCGTACTTTGTCTGACTAC 167128 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||||| || || |||||| | ||| | || ||| || Sbjct 167127 AACATTCAGAAGGAGTCCACCCTTCATCTTGTGTTGAGA 167089 >SEQ35906 Length=62346 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | || || || || |||| || || || ||| || Sbjct 33246 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACACTCGAGGTTGAACCC 33305 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || || || || || ||||| || ||||| || ||| Sbjct 33306 TCGGACACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 33365 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 | || | || || ||||| || || ||| | || ||| ||| | | || || ||| Sbjct 33366 CGGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTGCTTTGTCTGACTAC 33425 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||| || |||||| | ||| | || ||| || Sbjct 33426 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 33464 >SEQ28820 Length=113666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | | || || || |||| || || || ||| || Sbjct 62480 AAGATGCAGATTTTTGTGAAGACCCTGATGGGGAAGACCATCACGCTCGAGGTTGAACCC 62421 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || || || || || ||||| || ||||| || ||| Sbjct 62420 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 62361 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| || || ||| | || ||| ||| || | || || ||| Sbjct 62360 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 62301 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||| || || ||| | ||| | || ||| || Sbjct 62300 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGA 62262 >seq1037 Length=126922 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | || || || || |||| ||||| || ||| || Sbjct 82408 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAATCC 82467 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || || || || || ||||| | || | || ||| Sbjct 82468 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAAGAATATCTCCTGAT 82527 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| || || ||| | || ||| ||| || | || || ||| Sbjct 82528 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 82587 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||| || || ||| | ||| | |||||| || Sbjct 82588 AACATTCAAAAGGAGTCTACCCTTCATCTTGTTTTGAGA 82626 >SEQ23137 Length=3047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | || || || || |||| || || || ||| || Sbjct 249 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTTGAACCC 190 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || || || || || ||||| || ||||| || ||| Sbjct 189 TCAGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 130 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || | ||| || || ||| | || ||| || || | || || ||| Sbjct 129 CAGCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATGGCCCTACTTTGTCTGACTAC 70 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || ||| | ||| | || ||| || | || || ||| Sbjct 69 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGGT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419234733949255