Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value SEQ23137 118 9e-22 SEQ28820 114 1e-20 seq1037 109 5e-19 SEQ13217 107 2e-18 SEQ43829 100 2e-16 SEQ35906 100 2e-16 SEQ31259 100 2e-16 SEQ37766 98.7 8e-16 SEQ57164 96.9 3e-15 SEQ50471 87.8 2e-12 >SEQ23137 Length=3047 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||||||||| || Sbjct 19 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 78 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| || || || ||||| |||| || | ||| || || ||||| Sbjct 79 CAAAGTAGGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGG 138 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 139 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 198 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || |||||||||||||| Sbjct 199 CTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 246 >SEQ28820 Length=113666 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | ||||| || |||||||||||||| || Sbjct 62250 ACCACCATGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 62309 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| || | ||| || || ||||| Sbjct 62310 CAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 62369 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 62370 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 62429 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || |||| || || |||||||||||||| Sbjct 62430 CTCGAGCGTGATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCAT 62477 >seq1037 Length=126922 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | ||||||||||| | ||| | ||||| || |||||||||||||| || Sbjct 82638 ACCACCATGGAGTCTCAAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 82579 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| || | ||| || || |||| Sbjct 82578 CAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGA 82519 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || | ||| || || ||||| |||| | ||| | ||||| | |||||| || Sbjct 82518 TATTCTTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAAC 82459 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || || || |||||||||||||| Sbjct 82458 CTCAAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 82411 >SEQ13217 Length=170878 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 |||| |||||||| || | ||| | || || || || ||||||||||| || || | Sbjct 167081 CCACAGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAA 167140 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| || || || ||||| |||| || | ||| || || |||||||| Sbjct 167141 GTACGGCTATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATT 167200 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 ||||| || || ||||| |||| | ||| | ||||| | |||||| || || Sbjct 167201 CCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCA 167260 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || || || || || || || |||||||||||||| Sbjct 167261 AGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 167304 >SEQ43829 Length=74093 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || || || || Sbjct 42471 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 42412 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 42411 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTC 42352 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| |||| ||| | || ||||||||||| || Sbjct 42351 ACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 42292 Query 114366 TTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 42291 TTCACGAAAATCTGCATG 42274 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || || || || Sbjct 42243 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 42184 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 42183 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTC 42124 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 42123 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 42064 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 42063 TTCACGAAGATTTGCAT 42047 >SEQ35906 Length=62346 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 33476 ACCACCACAGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 33417 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || ||| |||||| || || || ||||| |||| || | ||| | || ||||| Sbjct 33416 CAAAGCACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCCGATCAGGAGG 33357 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 33356 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCGAGGGTTCAAC 33297 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || || || |||||||||||||| Sbjct 33296 CTCGAGTGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 33249 >SEQ31259 Length=129631 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | ||||| | |||||||||||||| || Sbjct 129219 ACCACCATGGAGTCTCAACACAAGATGAAGGGTAGACTGCTTTTGAATGTTGTAGTCAGA 129278 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| || | ||| || || ||||| Sbjct 129279 CAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 129338 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| ||||| | || ||| || Sbjct 129339 AATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTGTAGTGTCCGAGGGTTCAAC 129398 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || | || || || || |||||||||||||| Sbjct 129399 CTCGAGCGTGATGGTCTTCTCTGTAAGGGTCTTCACAAAAATCTGCAT 129446 >SEQ37766 Length=173039 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| ||||| | || | ||| | ||||| || |||||||||||||| || Sbjct 157071 ACCACCACGGAGTCTTAGCACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 157130 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA----TGAGACGCTGTTGGTCCG 114270 || |||| | |||||| || || || ||||| ||| | || | ||| || || | Sbjct 157131 CAAAGTATGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAG 157190 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 ||||||| ||||| || || ||| || | |||| | ||| | ||||| | || || Sbjct 157191 GAGGAATTCCTTCCTTATCCTGGATC-TTGGCTTTACATTTTCTATAGTGTCCGAGGGTT 157249 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | || | || || || ||||| || || |||||||||||||| Sbjct 157250 CAACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 157301 >SEQ57164 Length=103104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || || ||||||||||| || Sbjct 21527 ACCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 21468 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| || || || ||||| |||| || | ||| || || ||||| Sbjct 21467 CAAAGTACAGCTATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGG 21408 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| | Sbjct 21407 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAGC 21348 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | || | || || || || || || || |||||||||||||| Sbjct 21347 CTTGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 21300 >SEQ50471 Length=54286 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || |||||||||||||| | | Sbjct 42306 ACCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGT--CA 42249 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| |||||| || || || ||||| |||| || | || || || ||||| Sbjct 42248 GACAGTACGGCCATCTTCCAGGTGCTTTCCAGCAGAGATCAGTCTCTTCTGATCAGGAGG 42189 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || | |||| |||| | ||| | ||||| | || ||| || Sbjct 42188 AATTCCTTCCTTATCCTCGATCTCGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 42129 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCA-GAGTTTTTACAAAAATCTGCAT 114382 || | || || || || | | | || || |||||||||||||| Sbjct 42128 CTCGAGCGTGACAGTCTTCTACCTAACGGGTCTTCACAAAAATCTGCAT 42080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419640656346324