Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value SEQ13259 93.3 8e-14 SEQ32083 84.2 4e-11 >SEQ13259 Length=38172 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| ||| | ||||||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 17278 ACCTCATCCTTGCTGGTGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTC 17219 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||||| ||| || ||| ||| || |||| || |||||||||||| Sbjct 17218 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATG 17168 >SEQ32083 Length=112626 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || |||||| | || || || || ||||||||||| ||| | || || || || |||||| Sbjct 102680 GTGGCCTTTGCAGCGGTGGAAGGAATCTTCTTCTCTGGCTCTTTTGCATCGATATTCTGG 102621 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 |||||| || || ||||||||| || || || || || || || || ||||| ||| Sbjct 102620 CTCAAGAAGCGGGGACTGATGCCCGGCCTTACGTTTTCCAATGAGCTTATTAGCAGAGAC 102561 Query 42828 GAGG 42831 |||| Sbjct 102560 GAGG 102557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943200952549520