Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value SEQ47856 96.9 4e-15 >SEQ47856 Length=103108 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||| | || ||||| ||| | |||||||||||||| || ||||||| ||||| | Sbjct 38878 AGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 38937 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| ||||| || ||||| | ||| ||| ||| || ||| | || || |||| || | Sbjct 38938 TGCCCCAGGCAGAGAACCACGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAGAGA 38997 Query 9981 ATCTAAAGACCCT 9993 | | |||||||| Sbjct 38998 AGTTGAAGACCCT 39010 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | ||||| ||||||| |||||||||||| || || |||| || Sbjct 41069 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAATGAATTTGACATCTTCATCAACTGCA 41128 Query 10140 TAGAAGCATACATGACAATTAAA 10162 ||||||| ||||||||||| ||| Sbjct 41129 TAGAAGCGTACATGACAATCAAA 41151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552050589714080