Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value SEQ28820 134 3e-26 SEQ23137 134 3e-26 SEQ37766 132 1e-25 seq1037 125 2e-23 SEQ31259 120 7e-22 SEQ57164 116 9e-21 SEQ35906 116 9e-21 SEQ11338 95.1 3e-14 >SEQ28820 Length=113666 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| | || ||||||| || || ||||| || || ||||| | Sbjct 62251 CCACCATGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 62310 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || ||||| || |||||||| | ||| ||| | || Sbjct 62311 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 62370 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 62371 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 62430 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| |||| ||||| || || |||||||| Sbjct 62431 TCGAGCGTGATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCAT 62477 >SEQ23137 Length=3047 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || ||||||| || || ||||| || || ||||| | Sbjct 20 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 79 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || ||||| | || ||||| || ||||||| | ||| ||| | || Sbjct 80 AAAGTAGGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGA 139 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 140 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 199 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| ||||| ||||| || || |||||||| Sbjct 200 TCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 246 >SEQ37766 Length=173039 Score = 132 bits (146), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| || || ||||||| || || ||||| || || ||||| | Sbjct 157072 CCACCACGGAGTCTTAGCACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 157131 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACG----CTGTTGAGAATC 288362 | || | || ||||| | || ||||| || |||||||| | ||| ||| | Sbjct 157132 AAAGTATGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAGG 157191 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || |||||||| ||||||||||| || ||||| || |||||||||| || | ||| Sbjct 157192 AGGAATTCCTTCCTTATCCTGGATCTTGGCTTT-ACATTTTCTATAGTGTCCGAGGGTTC 157250 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| |||||||| ||||| ||||| || || |||||||| Sbjct 157251 AACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 157301 >seq1037 Length=126922 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| | || ||||||| || || ||||| || || ||||| | Sbjct 82637 CCACCATGGAGTCTCAAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 82578 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || ||||| || |||||||| | ||| ||| | | Sbjct 82577 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGAT 82518 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||| ||| ||||||||||| || || || || |||||||||| || ||||| || Sbjct 82517 ATTCTTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACC 82458 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| |||||||| || || ||||| || || |||||||| Sbjct 82457 TCAAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 82411 >SEQ31259 Length=129631 Score = 120 bits (132), Expect = 7e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| | || ||||||| || | ||||| || || ||||| | Sbjct 129220 CCACCATGGAGTCTCAACACAAGATGAAGGGTAGACTGCTTTTGAATGTTGTAGTCAGAC 129279 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || ||||| || |||||||| | ||| ||| | || Sbjct 129280 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 129339 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||| ||||| || || || || |||||| ||| || | ||| || Sbjct 129340 ATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTGTAGTGTCCGAGGGTTCAACC 129399 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||||||||| |||||| | || || ||||| || || |||||||| ||| Sbjct 129400 TCGAGCGTGATGGTCTTCTCTGTAAGGGTCTTCACAAAAATCTGCATCATG 129450 >SEQ57164 Length=103104 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || ||||||| ||| || || || || || ||||| | Sbjct 21526 CCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAC 21467 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | | ||||| | || ||||| || ||||||| | ||| ||| | || Sbjct 21466 AAAGTACAGCTATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGA 21407 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| | Sbjct 21406 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAGCC 21347 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||||||| |||||||| || || ||||| || || |||||||| Sbjct 21346 TTGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 21300 >SEQ35906 Length=62346 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 33475 CCACCACAGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 33416 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | | || || ||||| | || || || || |||||||| | ||| || | || Sbjct 33415 AAAGCACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCCGATCAGGAGGA 33356 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | || | ||| || Sbjct 33355 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCGAGGGTTCAACC 33296 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || ||||| || || |||||||| Sbjct 33295 TCGAGTGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 33249 >SEQ11338 Length=128349 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||| | ||||| | ||| || || || || || ||||| | | | || || || Sbjct 64148 AAGTTCAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGAACGGCCATC 64089 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 ||| | || || || || ||| |||| | ||| |||| | || |||||||| ||||| Sbjct 64088 TTCCAGCTGCTTCCCAGCAAAGGTCAGTCTCTGCTGAGCAGGAGGAATTCCTTCCTTATC 64029 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 |||||| | || || | |||||||||| || | ||| || || ||| | || || Sbjct 64028 CTGGATCTCAGCCTTTCCATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCATAATGGT 63969 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 |||||| || || ||||| || || ||||||||| || Sbjct 63968 CTTCCCTGTAAGGGTCTTCACAAAAATCTGCATTTTG 63932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178196971272506