Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value SEQ28820 96.9 3e-15 SEQ23137 96.9 3e-15 seq1037 96.9 3e-15 SEQ13217 91.5 1e-13 SEQ13259 89.7 5e-13 SEQ43829 86.0 6e-12 SEQ57164 82.4 8e-11 SEQ37766 82.4 8e-11 SEQ35906 82.4 8e-11 SEQ31259 82.4 8e-11 >SEQ28820 Length=113666 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || |||||| || Sbjct 62265 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 62324 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | | |||| || | ||| || || ||||| || ||||| || || Sbjct 62325 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 62384 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 62385 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 62444 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||| || || |||||||||||||| Sbjct 62445 CTTCCCCATCAGGGTCTTCACAAAAATCTGCAT 62477 >SEQ23137 Length=3047 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || |||| | || Sbjct 34 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGGGCCATC 93 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | | |||| || | ||| || || ||||| || ||||| || || Sbjct 94 TTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 153 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 154 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 213 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||| || || |||||||||||||| Sbjct 214 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 246 >seq1037 Length=126922 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 |||||| | ||| | | | ||||||||||||||||||||||| || |||||| || Sbjct 82623 CAAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 82564 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | | |||| || | ||| || || |||| ||| | ||| || || Sbjct 82563 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGATATTCTTTCCTTATC 82504 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | || || ||||| | ||| | || Sbjct 82503 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATGGT 82444 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || || |||||||||||||| Sbjct 82443 CTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 82411 >SEQ13217 Length=170878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | |||||||| |||||||||||||| || |||||| || Sbjct 167092 CAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCTATC 167151 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | | |||| || | ||| || || ||||| || ||||| || || Sbjct 167152 TTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 167211 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | || || ||||| | ||| | || Sbjct 167212 TTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATGGT 167271 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || || |||||||||||||| Sbjct 167272 CTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 167304 >SEQ13259 Length=38172 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| ||||| | ||| ||||||||||| || ||| |||| || ||||| | Sbjct 17262 TGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGGT 17203 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| || ||||| || | |||||| ||||||||||||| ||| ||||| Sbjct 17202 TGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTC 17151 >SEQ43829 Length=74093 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || || || || |||| | Sbjct 42468 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 42409 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || |||||||| ||||| ||| || || | Sbjct 42408 AAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACA 42349 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||| | || | || || || ||||| || || Sbjct 42348 TTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTC 42289 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 42288 ACGAAAATCTGCATG 42274 >SEQ57164 Length=103104 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGT 138460 ||| || | ||| | | | |||||||| |||||||||||||| || ||||| || | | Sbjct 21512 CAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACAGCTA-T 21454 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | || || || || || | | |||| || | ||| || || ||||| || ||||| || | Sbjct 21453 CTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 21394 Query 138521 CGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 | ||| || |||| | ||| | ||||| | | || ||| || ||| | | Sbjct 21393 CCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTTGAGCGTGATGG 21334 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || || || || |||||||||||||| Sbjct 21333 TCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 21300 >SEQ37766 Length=173039 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/198 (70%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||| | || || || || || || | | Sbjct 157105 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTGCTTTCCAGCA 157164 Query 138481 TAGATTAGACG----CTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTT 138536 |||| || | ||| || || ||||| || ||||| || || ||| || ||| Sbjct 157165 AAGATCAGTCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTT 157224 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 ||| ||| | ||||| | | || ||||||| ||| | || || || ||||| || Sbjct 157225 ACATT-TTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTCAGGGT 157283 Query 138597 TTTTACAAAAATCTGCAT 138614 || |||||||||||||| Sbjct 157284 CTTCACAAAAATCTGCAT 157301 >SEQ35906 Length=62346 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || || ||| || Sbjct 33461 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGCACGGCCATC 33402 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | | |||| || | ||| | || ||||| || ||||| || || Sbjct 33401 TTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCCGATCAGGAGGAATTCCTTCCTTATC 33342 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| || | || Sbjct 33341 CTGGATCTTGGCCTTTACATTTTCTATTGTGTCCGAGGGTTCAACCTCGAGTGTGATGGT 33282 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || || |||||||||||||| Sbjct 33281 CTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 33249 >SEQ31259 Length=129631 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | |||| |||||||||||||||||| || |||||| || Sbjct 129234 CAACACAAGATGAAGGGTAGACTGCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 129293 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | | |||| || | ||| || || ||||| || ||||| || || Sbjct 129294 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 129353 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| ||||| | | || ||||||| ||| | || Sbjct 129354 TTGGATCTTGGCCTTTACATTTTCTGTAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 129413 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || || || || |||||||||||||| Sbjct 129414 CTTCTCTGTAAGGGTCTTCACAAAAATCTGCAT 129446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495664236319440