Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value SEQ23137 95.1 9e-15 SEQ28820 91.5 1e-13 SEQ37766 84.2 2e-11 seq1037 82.4 5e-11 >SEQ23137 Length=3047 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||||||||| || ||||| |||||||| || Sbjct 20 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 79 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||| | || || ||||| | |||| | ||| || || ||| Sbjct 80 AAAGTAGGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGA 139 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| |||||||||| || ||| || Sbjct 140 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 199 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || ||||| || || |||||||| ||||| || Sbjct 200 TCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 249 >SEQ28820 Length=113666 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||||||||| || ||||| |||||||| || Sbjct 62251 CCACCATGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 62310 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | || || ||||| | |||| | ||| || || ||| Sbjct 62311 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 62370 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| |||||||||| || ||| || Sbjct 62371 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 62430 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || |||| || || |||||||| ||||| || Sbjct 62431 TCGAGCGTGATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCATCTT 62480 >SEQ37766 Length=173039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||||| || | |||||||||||| || ||||| |||||||| || Sbjct 157072 CCACCACGGAGTCTTAGCACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 157131 Query 15010 AGAATTCTCG-CGTCTTCTAATTGTTTGCCAGCGTATA----TCAAACGCTGTTGGTCGT 15064 | || | | | | ||||| | || || ||||| | | ||| | ||| || || Sbjct 157132 A-AAGTATGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAG 157190 Query 15065 TTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTT 15124 |||||||||||||| || || ||| |||||| |||||||||| || || Sbjct 157191 GAGGAATTCCTTCCTTATCCTGGATCTTG-GCTTTACATTTTCTATAGTGTCCGAGGGTT 157249 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || || | || ||||| || || ||||| || || |||||||| ||||| || Sbjct 157250 CAACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 157304 >seq1037 Length=126922 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| ||||| | |||||||||||| || ||||| |||||||| || Sbjct 82637 CCACCATGGAGTCTCAAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 82578 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | || || ||||| | |||| | ||| || || | Sbjct 82577 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGAT 82518 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||| |||||| || || ||| |||||| |||||||||| || ||| || Sbjct 82517 ATTCTTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACC 82458 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || || || || || |||||||| ||||| || Sbjct 82457 TCAAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTT 82408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356971991469695