Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value SEQ28820 113 4e-20 SEQ23137 113 4e-20 seq1037 102 8e-17 SEQ37766 98.7 9e-16 SEQ43829 96.9 3e-15 SEQ35906 95.1 1e-14 SEQ31259 95.1 1e-14 SEQ13217 93.3 4e-14 SEQ57164 91.5 1e-13 SEQ50471 82.4 7e-11 >SEQ28820 Length=113666 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||| | ||| | |||||||| |||||||| ||||| || Sbjct 62248 GCACCACCATGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA 62307 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| |||||||| |||||| || ||||||||| ||| Sbjct 62308 GACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGA 62367 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 62368 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCA 62427 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || |||| || || |||||||||||||| Sbjct 62428 ACCTCGAGCGTGATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCAT 62477 >SEQ23137 Length=3047 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||| ||||| || Sbjct 17 GCACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA 76 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || ||||| |||||||| |||||| || ||||||||| ||| Sbjct 77 GACAAAGTAGGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGA 136 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | ||||| | || Sbjct 137 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCA 196 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || ||||| || || |||||||||||||| Sbjct 197 ACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 246 >seq1037 Length=126922 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| ||||| | | || ||| || | ||| | |||||||| |||||||| ||||| || Sbjct 82641 TGCACCACCATGGAGTCTCAAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTC 82582 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 || || || ||| || ||||| |||||||| |||||| || ||||||||| || Sbjct 82581 AGACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGG 82522 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || ||| | ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 82521 AGATATTCTTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTC 82462 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || || || || || |||||||||||||| Sbjct 82461 AACCTCAAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 82411 >SEQ37766 Length=173039 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | ||| | |||||||| |||||||| ||||| || Sbjct 157069 GCACCACCACGGAGTCTTAGCACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA 157128 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCG----CTGCTGATC 126999 || || | ||| || ||||| |||||||| |||||| || ||||||||| Sbjct 157129 GACAAAGTATGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATC 157188 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 ||||| || || ||||| ||| ||| || |||| | | ||| | ||||||| Sbjct 157189 AGGAGGAATTCCTTCCTTATCCTGGATCTTG-GCTTTACATTTTCTATAGTGTCCGAGGG 157247 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||| || | || || || ||||| || || |||||||||||||| Sbjct 157248 TTCAACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 157301 >SEQ43829 Length=74093 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| ||| || ||||| || || Sbjct 42471 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 42412 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || || || ||||||||| ||| || ||| Sbjct 42411 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTC 42352 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | |||||| || | ||| | || ||||||||||| || Sbjct 42351 ACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 42292 Query 127097 TTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 42291 TTCACGAAAATCTGCATG 42274 >SEQ35906 Length=62346 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 33478 GCACCACCACAGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCA 33419 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || | || ||| || ||||| || ||||| |||||| || |||| |||| ||| Sbjct 33418 GACAAAGCACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCCGATCAGGA 33359 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 33358 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCGAGGGTTCA 33299 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || || || || || |||||||||||||| Sbjct 33298 ACCTCGAGTGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 33249 >SEQ31259 Length=129631 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||| | ||| | ||||||| |||||||| ||||| || Sbjct 129217 GCACCACCATGGAGTCTCAACACAAGATGAAGGGTAGACTGCTTTTGAATGTTGTAGTCA 129276 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| |||||||| |||||| || ||||||||| ||| Sbjct 129277 GACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGA 129336 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| || ||| || ||| | | ||| ||||||| || Sbjct 129337 GGAATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTGTAGTGTCCGAGGGTTCA 129396 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || | || || || || |||||||||||||| Sbjct 129397 ACCTCGAGCGTGATGGTCTTCTCTGTAAGGGTCTTCACAAAAATCTGCAT 129446 >SEQ13217 Length=170878 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || |||||| | ||| | || ||||| || ||||| ||||| || || || || Sbjct 167089 TCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCT 167148 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| |||||||| |||||| || ||||||||| ||||| || || ||||| Sbjct 167149 ATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 167208 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || ||| || ||| | | ||| | ||||||| || || || | || | Sbjct 167209 ATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGAT 167268 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || |||||||||||||| Sbjct 167269 GGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 167304 >SEQ57164 Length=103104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | || ||||| || ||||| ||||| || Sbjct 21529 GCACCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 21470 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || ||||| |||||||| |||||| || ||||||||| ||| Sbjct 21469 GACAAAGTACAGCTATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGA 21410 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | ||||| | || Sbjct 21409 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCA 21350 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | | || || | || || || || || || || |||||||||||||| Sbjct 21349 GCCTTGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 21300 >SEQ50471 Length=54286 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 42308 GCACCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCA 42249 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || |||||||| |||||| || || |||||| ||| Sbjct 42248 GACA--GTACGGCCATCTTCCAGGTGCTTTCCAGCAGAGATCAGTCTCTTCTGATCAGGA 42191 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| | ||| | | ||| | ||||||| || Sbjct 42190 GGAATTCCTTCCTTATCCTCGATCTCGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCA 42131 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCA-GAGTTTTTACAAAAATCTGCAT 127113 || |||| || || || || | | | || || |||||||||||||| Sbjct 42130 ACCTCGAGCGTGACAGTCTTCTACCTAACGGGTCTTCACAAAAATCTGCAT 42080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474927661054480