Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq4625 167 3e-36 SEQ15013 123 4e-23 >seq4625 Length=35579 Score = 167 bits (184), Expect = 3e-36 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||| ||||| || ||||| |||||||| | || || || | ||| Sbjct 16268 AAGGGACAGCCCTTTACATTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATC 16209 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||| | || || || || ||||| || ||||||||| || ||||||||| Sbjct 16208 TTAAAACCTGCTTCTCCTCCAAACGTGCTTGGCTTCCAGTACTGAGGAGAGCAGATGGGA 16149 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| |||||| Sbjct 16148 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCGAAG 16089 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 ||||| | ||||| || ||||| || | | | ||| ||| || || | || |||| | Sbjct 16088 ATGGCGTCTGGACGAGGCTTTTCCACCAGCAGGGCAGGGTACAGCTCCATGGCATCGATG 16029 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || |||||||||| || ||||| || || |||||||| ||| Sbjct 16028 TCACCGTAGAGGGCTTTCAGCTCGGTGGCCATTTCCTTCTCTCCT 15984 Score = 159 bits (176), Expect = 5e-34 Identities = 212/292 (73%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 |||||| ||||||||||| |||||||| || || || | || | || |||| | ||| Sbjct 15197 CCGACCAGCAATCTGTCTGGTGAACGACTCGACGAACCGCGCGAGCCCATGCTCCAGGAG 15138 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| |||| | | | |||| | | || ||| |||| Sbjct 15137 GATGGAGTTGTTGTAGAGGAACTGTTTGAAGCTGTACTCCTCCTCCTGGATGTGAAAGGT 15078 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || |||| ||||| |||||| | ||||| || ||||| ||||| || || |||||||| Sbjct 15077 GTCGGGCAGCAGAGGGTGCCAGTGATAGAGCGTGTTGAATTCGGCGGCGATGCGGTTCTG 15018 Query 9612 GTACTGAAAG-GCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| || || | | ||| || | |||||||||||| | || | ||||||||||| Sbjct 15017 ATACTGGAACTGCTGG-CTGAAAAGCAGCTCCGGGTCAAACTTGAGTTTGAAGTGGTACC 14959 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 |||| || ||||| || || | | || | ||| || ||||| || || || Sbjct 14958 CGCTCAGGTGCTGCACGTAGTCTTCAATCACAATCTTGATGGTCTCTCCTGT 14907 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| | || ||||| || || ||| Sbjct 12854 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATTGGCTACTGGAGGAAGGACCCTGGTA 12795 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||| | ||||| ||||| | | ||||| Sbjct 12794 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTCTTGTAACCATAGTGCACATTGTAAGTT 12735 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 12734 GGTGGACTGTCAATCAAATGTGATCTGGCT 12705 >SEQ15013 Length=36067 Score = 123 bits (136), Expect = 4e-23 Identities = 177/248 (71%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || |||| || || || || || || ||||| ||||| || ||||||||| || Sbjct 4318 GCTGTGTTGACGAGGTTGAAGCCCACCTCACCACCGAACGTGCTCGGCTTCCAGTACTCC 4377 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || || |||||| ||| | | ||| || || | ||||||||||||||| | ||| || Sbjct 4378 GGCGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAACGGAGCCCCAATCTCTATC 4437 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || ||||| || ||||||| ||| | ||||| | || | || | ||||| Sbjct 4438 ATACTCTCCCCAAAGATGGAGTTGGGCTGGCACTTTTCCAGGAGCAGCCCCGGGTAGAAC 4497 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| |||| ||||||||| || | | ||||| ||||| || |||| ||| ||| Sbjct 4498 TCCAAAGCGTCGATGTCGCCATACAGCTCCTGTAACTCCGCAGCCATTTCCTCCTCTCCT 4557 Query 9176 ACA-AGCG 9182 || |||| Sbjct 4558 GCAGAGCG 4565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722855663501800