Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value SEQ43829 141 1e-28 SEQ23565 131 2e-25 SEQ17007 100 3e-16 SEQ11330 100 3e-16 SEQ45421 82.4 9e-11 >SEQ43829 Length=74093 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 42255 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 42196 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||||||||| || |||| | ||||||||| | || | | ||||||||| | Sbjct 42195 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 42136 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | ||||| || | ||||| |||| |||||||| ||| Sbjct 42135 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTG 42076 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || || || ||||||||||||||| Sbjct 42075 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 42043 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 42483 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 42424 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||||||||| || |||| | ||||||||| | || | | ||||||||| | Sbjct 42423 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 42364 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | ||||| || | || || |||| |||||||| ||| Sbjct 42363 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTG 42304 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || || || ||||| Sbjct 42303 CCGGTCAGGGTCTTCACGAAAATCTGCAT 42275 >SEQ23565 Length=11847 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||| |||| || ||| || ||||| ||||||||||| Sbjct 9277 CCACCTCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 9336 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 9337 AGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 9396 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 9397 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 9456 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 9457 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9503 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||| |||| || ||| || ||||| ||||||||||| Sbjct 9505 CCACCTCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 9564 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 9565 AGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 9624 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 9625 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 9684 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 9685 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9731 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| || ||||| | || || ||||||||||| || || Sbjct 9084 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAA 9143 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || ||||||||| |||||| ||||| | Sbjct 9144 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 9203 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || |||| |||||||| ||||| ||||| || || || Sbjct 9204 CTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 9263 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 9264 AAAGATCTGCAT 9275 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||| |||| || ||| || ||||| ||||||||||| Sbjct 9733 CCACCTCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 9792 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 9793 AGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 9852 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 9853 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 9912 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||||||||||| || || | ||||| || ||||| |||||| Sbjct 9913 TCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 9960 >SEQ17007 Length=364713 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||||||||| || || ||||| | || || ||||||||||| |||| Sbjct 137614 CTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAG 137555 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || |||| ||| ||||||| ||||| | | Sbjct 137554 TATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTCGTCTTTGATCTTGGCCTTGACCTT 137495 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | ||||| || | ||| | || | |||||| | ||||| |||| Sbjct 137494 CTCGATGGTGTCACTGGGTTCGTCCTCAAGAGTGATGCTCTTGCCTGTCA 137445 >SEQ11330 Length=6390 Score = 100 bits (110), Expect = 3e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 46418 TAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGG 46477 ||||| || || || || | || || ||||||||||| |||||||||| | ||||||| Sbjct 6124 TAGTCAGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGG 6065 Query 46478 TCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTC 46537 || | || | || |||| ||| |||||| ||||| || | | ||||| || Sbjct 6064 TCAGGTGGGATGCCTTCCTCGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTG 6005 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || || || | |||||||| ||||||||||| || || || ||||| ||||| ||| Sbjct 6004 GGCTCAACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 5945 >SEQ45421 Length=309261 Score = 82.4 bits (90), Expect = 9e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 || ||||| ||| |||| || || |||| | | || || ||||||||||| ||| ||||| Sbjct 257101 TTCTGGATGTTGAAGTCAGACAGGGTGCACCCATCCTCCAGCTGCTTGCCAGCGGATATC 257042 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525 | | ||||||||| | | | || |||||| | |||||| ||| || || Sbjct 257041 AGCCTCTGCTGGTCAGGTGAGATGCCTTCCTTGGCTTGGATCTTGGCTTTGGCATTCTCC 256982 Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 | |||| || | || || || |||||||| ||||||||||| || || | ||| Sbjct 256981 ATGGTGTTACTGGGCTCAACCTCACAAGTGATGGTCTTGCCCGTCAGGGTCTTCATGAAG 256922 Query 46586 ATTTGCAT 46593 || ||||| Sbjct 256921 ATCTGCAT 256914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564557096960040