Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value SEQ60740 95.1 1e-14 SEQ56198 95.1 1e-14 SEQ56190 93.3 3e-14 SEQ65010 91.5 1e-13 SEQ61792 89.7 4e-13 SEQ60118 89.7 4e-13 SEQ56197 89.7 4e-13 SEQ56196 89.7 4e-13 SEQ61791 86.0 5e-12 SEQ60113 86.0 5e-12 >SEQ60740 Length=15436 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | |||||| || || || || ||||| || | ||| || | | |||| Sbjct 9679 CCTCATGCTGTACATGGCACGTGTAATTCTGCTCCTTCCCAGGAGGCACCACCACAGCTG 9738 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| |||||| || ||| | | | Sbjct 9739 CCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTGTCCACCAGCTCCATGTCCTGGG 9798 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | || ||||| ||||| |||||||| || Sbjct 9799 TCAGGTCCTCCCCATCCAACTGCCAGGTCAGGGAGATGTCAGCAGGGTAGAAGCCCAGGG 9858 Query 529 CCCAACA 535 |||| || Sbjct 9859 CCCAGCA 9865 >SEQ56198 Length=40653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || | ||||| || | ||| || | | |||| Sbjct 22629 CCTCATGGTGCACATGGCATGTGTAATGCTGCTCCTTCCCGGGAGGCACCACCACAGCTG 22570 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| |||||| || ||| | | | Sbjct 22569 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 22510 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | || ||||| ||||| |||||||| || Sbjct 22509 TCAGGTCCTCCCCATCCAACTGCCAGGTCAGGGAGATGTCAGCAGGGTAGAAGCCCAGGG 22450 Query 529 CCCAACA 535 |||| || Sbjct 22449 CCCAGCA 22443 >SEQ56190 Length=29671 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || | ||| | ||||||| | ||| || | | |||| Sbjct 12288 CCTCATGGTACACATGGCACCTGTATCTCTGCTCTTCTCCGGGAGGCACCACCACAGCTG 12229 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | |||||||| ||||| || ||| | | || Sbjct 12228 CCCACTTCTGGAAGGTTCCATCCCCTGAGGGTCTGGTGTCCACAAGCTCCATGTCCTGAG 12169 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | | | ||||| ||||| |||||||| || Sbjct 12168 TCAGGTCCTCCCCCTCCAACTGCCAGGTCAGGCTGATGTCAGCAGGGTAGAAGCCCAGGG 12109 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGTG 588 |||| || | || || | | || | |||| | | || ||||||||| ||| || Sbjct 12108 CCCAGCACCTCAGGGTGATGTCACCTTGAGGTCTGGGGTGATGGGTCACGTGTGCCTTTG 12049 Query 589 G 589 | Sbjct 12048 G 12048 >SEQ65010 Length=533 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || || ||||| || | ||||||| | | |||| Sbjct 261 CCTCATGCTGCACATGGCACGTGTAATTCTGCTCCTTCCCAGGAGGTACTACCACAGCTG 202 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| |||||| || ||| | | | Sbjct 201 CCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTGTCCACCAGCTCCATGTCCTGGG 142 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 |||| | ||| | ||| ||||| | | || ||||| ||||| |||||||| Sbjct 141 TCAGGTCCTCCCCATCCAACTGCCAGATCAGGGAGATGTCAGCAGGGTAGAAGCC 87 >SEQ61792 Length=25203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || | ||||| || | ||| || | | |||| Sbjct 24351 CCTCATGCTGCACATGGCATGTGTAATGCTGCTCCTTCCCAGGAGGCACCACCACAGCTG 24410 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| |||||| || ||| | | | Sbjct 24411 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 24470 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | || ||||| ||||| |||||||| || Sbjct 24471 TCAGGTCCTCCCCCTCCAACTGCCAGGTCAGGGAGATGTCAGCAGGGTAGAAGCCCAGGG 24530 Query 529 CCCAACA 535 |||| || Sbjct 24531 CCCAGCA 24537 >SEQ60118 Length=19496 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || | ||||| || | ||| || | | |||| Sbjct 6707 CCTCATGCTGCACATGGCATGTGTAATGCTGCTCCTTCCCAGGAGGCACCACCACAGCTG 6648 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| |||||| || ||| | | | Sbjct 6647 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 6588 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | | | ||||| ||||| |||||||| || Sbjct 6587 TCAGGTCCTCCCCCTCCAACTGCCAGGTCAGGCTGATGTCAGCAGGGTAGAAGCCCAGGG 6528 Query 529 CCCAACA 535 |||| || Sbjct 6527 CCCAGCA 6521 >SEQ56197 Length=68423 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || | ||||| || | ||| || | | |||| Sbjct 50983 CCTCATGCTGCACATGGCATGTGTAATGCTGCTCCTTCCCAGGAGGCACCACCACAGCTG 50924 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| |||||| || ||| | | | Sbjct 50923 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 50864 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | || ||||| ||||| |||||||| || Sbjct 50863 TCAGGTCCTCCCCCTCCAACTGCCAGGTCAGGGAGATGTCAGCAGGGTAGAAGCCCAGGG 50804 Query 529 CCCAACA 535 |||| || Sbjct 50803 CCCAGCA 50797 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || || ||||| || | ||| || | | |||| Sbjct 60127 CCTCATGGTGCACATGGCATGTGTAATTCTGCTCCTTCCCAGGAGGCACCACCACAGCTG 60068 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| || | || ||| | | || Sbjct 60067 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCAATAAGCTCCATGTCCTGAG 60008 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | || | ||| ||||| || | | | ||||| ||||| |||||||| || Sbjct 60007 TCAGGTCCTTCCCCTCCAACTGCCAGGTCAGGCTGATGTCAGCAGGGTAGAAGCCCAGGG 59948 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGTG 588 |||| || | || || | | || | |||| | | || |||||| ||| ||| || Sbjct 59947 CCCAGCACCTCAGGGTGATGTCACCTTGAGGTCTGGGGTGATGGGTCACATGAGCCTTTG 59888 Query 589 GAGAAACT 596 | ||| || Sbjct 59887 GGGAATCT 59880 >SEQ56196 Length=167701 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 346 ATGCCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGG 405 |||||||||| || |||||||| || ||| | |||| | ||||| || | | | Sbjct 144884 ATGCCTCATGGTTAACATGACATGTGTATCTCAGCTCCTCTCCAGCAGGAACCACCACAG 144825 Query 406 CTGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCAT 465 ||||||||||||| || |||||||| || || || ||||| |||||| || ||| | | Sbjct 144824 CTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCCACCAGCTCCATTTCCT 144765 Query 466 CAGT-CAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 || |||| || |||| | ||||| || | || || || ||||| |||||||| Sbjct 144764 GGGTGTGGTTGTTCCCATCCC-TCTGCCAGGTCAGGGAGATCTCAGCAGGGTAGAAGCCC 144706 Query 525 GTGGCCCAACA 535 |||||| || Sbjct 144705 AGGGCCCAGCA 144695 >SEQ61791 Length=41685 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || | ||||| || | ||| || | | |||| Sbjct 34120 CCTCATGCTGCACATGGCACGTGTAATGCTGCTCCTTCCCAGGAGGCACCACCACAGCTG 34179 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| ||||| || ||| | | | Sbjct 34180 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 34239 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | | | ||||| ||||| |||||||| || Sbjct 34240 TCAGGTCCTCCCCCTCCAACTGCCAGGTCAGGCTGATGTCAGCAGGGTAGAAGCCCAGGG 34299 Query 529 CCCAACA 535 |||| || Sbjct 34300 CCCAGCA 34306 >SEQ60113 Length=22058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || || ||||| || | ||||||| | | |||| Sbjct 3152 CCTCATGCTGCACATGGCACGTGTAATTCTGCTCCTTCCCAGGAGGTACTACCACAGCTG 3093 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || || || || | || ||| | | | Sbjct 3092 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTCGTCTCAATAAGCTCCATGTCCTGGG 3033 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | || ||||| ||||| |||||||| || Sbjct 3032 TCAGGTCCTCCCCATCCAACTGCCAGGTCAGGGAGATGTCAGCAGGGTAGAAGCCCAGGG 2973 Query 529 CCCAACA 535 |||| || Sbjct 2972 CCCAGCA 2966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397279765874712