Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value SEQ23565 143 6e-29 SEQ43829 131 4e-25 seq1037 125 2e-23 SEQ25611 102 2e-16 SEQ17007 100 6e-16 SEQ31117 98.7 2e-15 seq7114 93.3 9e-14 SEQ33625 87.8 4e-12 seq117 86.0 1e-11 >SEQ23565 Length=11847 Score = 143 bits (158), Expect = 6e-29 Identities = 168/226 (74%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| |||| || || Sbjct 9738 TCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 9797 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 9798 GCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 9857 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || ||| |||||| |||||||||||||| ||| || || || Sbjct 9858 TTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTC 9914 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | || || || || || ||||| ||||| | |||||| Sbjct 9915 TAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 9960 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| |||| || || Sbjct 9282 TCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 9341 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 9342 GCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 9401 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || ||| |||||| |||||||||||||| ||| || || || Sbjct 9402 TTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTC 9458 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| ||||||| || || || || | ||||| Sbjct 9459 CAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9503 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| |||| || || Sbjct 9510 TCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 9569 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 9570 GCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 9629 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || ||| |||||| |||||||||||||| ||| || || || Sbjct 9630 TTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTC 9686 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| ||||||| || || || || | ||||| Sbjct 9687 CAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9731 Score = 140 bits (154), Expect = 7e-28 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||||||||| || || ||||| |||| || || | |||||||| Sbjct 9067 ACCAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 9126 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || || |||||||| ||||| || Sbjct 9127 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9186 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| |||||| |||||||||||||| ||| || || || ||||| | ||| Sbjct 9187 ATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCCAGGGTGATGGTC 9243 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| || || || || | ||||| Sbjct 9244 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9275 >SEQ43829 Length=74093 Score = 131 bits (144), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| |||| || || | |||||||| Sbjct 42255 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 42196 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||| ||||| ||||| || Sbjct 42195 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 42136 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||||||||| ||| ||||| || | ||| | ||| Sbjct 42135 ATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAAGGTGATGGTC 42079 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | |||||||| Sbjct 42078 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTT 42045 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| |||| || || | |||||||| Sbjct 42483 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 42424 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||| ||||| ||||| || Sbjct 42423 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 42364 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || || | ||| | ||| Sbjct 42363 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCCAAGGTGATGGTC 42307 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 42306 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 42275 >seq1037 Length=126922 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||||||||||||| ||||| || ||||| |||||||| ||||| || | | ||| | Sbjct 82629 GAGTCTCAAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 82570 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| |||||||| || || ||||| |||| || || || |||| || | ||| Sbjct 82569 GCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGATATTCTTTC 82510 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || ||| || || || || |||||||| ||| || ||||| || Sbjct 82509 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGT 82450 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || || || || | ||||| Sbjct 82449 GATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 82411 >SEQ25611 Length=18984 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| |||||||| |||||||| ||||| || | | ||| | Sbjct 14006 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 14065 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 | || ||| ||||||||||| || || | || | || || || |||||||| ||||| Sbjct 14066 CAATATTCCAGCTGCTTACCAGCAAAAAACAGCCTCTGCTGATCAGGAGGAATTCCTTCC 14125 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || | || || | | ||||| || |||||||| || ||| || || || || Sbjct 14126 TTATCCTTGATCTTAACCATTACGTTTTCTATGGTGTCTGAGGGTTCAACCTCGAGTGT 14184 >SEQ17007 Length=364713 Score = 100 bits (110), Expect = 6e-16 Identities = 131/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || |||||||| || | || || | ||||| || |||||||| || Sbjct 137619 GTGGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 137560 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||| || || | || ||||| || || |||||||| | ||||| || || |||| Sbjct 137559 GCGAGTATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTCGTCTTTGATCTTGGCCTTG 137500 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || ||||| |||||||| ||| ||| | ||||| || | |||| ||||||||| Sbjct 137499 ACCTTCTCGATGGTGTC---ACTGGGTTCGTCCTCAAGAGTGATGCTCTTGCCTGTCAAA 137443 >SEQ31117 Length=51645 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 194959 ATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018 || |||||||| | ||| || | |||||||| |||||||| || || ||| || | | Sbjct 13267 ATGTTGTAATCAGAAAGGGTGCAGCCATCTTCCAGCTGCTTGCCGGCAAAGCTAGGCCTC 13326 Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || |||||||| || |||||||| || || ||||| || ||| ||||||||||||||| Sbjct 13327 TGCTGGTCTGGTGGGATGCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCAATGGTG 13386 Query 195079 TC 195080 || Sbjct 13387 TC 13388 >seq7114 Length=58683 Score = 93.3 bits (102), Expect = 9e-14 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||| || | || |||||||||||||| | || ||||| || | | | | Sbjct 891 AGGCTCAGCACCATGTACAGAGTGGACTCTTTCTTGATGTTGTAGTCAGACAAAATGTGG 950 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || |||| ||| || ||||| || || | | ||||| || || |||||||| Sbjct 951 CCATCCTCCAGCTTCTTGCCAGCGAATATCAGCCTCTTCTGGTCAGGTGGGATGCCTTCC 1010 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT----CCGAACTTTCCACTTCAAG 195098 |||||||| || || |||||| |||| ||||||| | | || | |||||| Sbjct 1011 TTGTCTTGGATCTTGGCCTTGACATTCTTGATGGTGTGTCACTGGGCTCGACCTTTCAAG 1070 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| ||||||| |||||||| || | ||||| Sbjct 1071 AGTGATGGTCTTGCCTGTCAGGGTTTTTACAAAGATCTGCAT 1112 >SEQ33625 Length=46208 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| |||||||| |||||||| ||||| || | | || Sbjct 17382 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGCATGG 17441 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| ||||||||||| || ||||| |||| || || | ||| |||| ||||| Sbjct 17442 CCATCTTGCAGCTGCTTACCAGCAAAGATCAGTC--TGCTGATGAGGAAGAATTCCTTCC 17499 Query 195043 TTGTC 195047 || || Sbjct 17500 TTATC 17504 >seq117 Length=65476 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| ||||| ||||| |||||||| |||||||| |||| || | | ||| | || Sbjct 65181 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGACC 65122 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| ||||||||||| | ||| | || | || || | ||||||| ||||| || Sbjct 65121 ATCTTCCAGCTGCTTACCAGGAAAGGTCAGCCTCTGCTGAT---GAGGAATTCCTTCCTT 65065 Query 195045 GTCTTGAA 195052 || |||| Sbjct 65064 ATCCTGAA 65057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108110867727509