Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value SEQ23565 109 4e-19 SEQ11330 87.8 1e-12 SEQ28820 84.2 1e-11 SEQ13217 84.2 1e-11 SEQ35906 82.4 5e-11 >SEQ23565 Length=11847 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 9067 ACCAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 9126 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | || |||||||| Sbjct 9127 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9186 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 9187 ATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCT 9244 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||||||||| Sbjct 9245 TGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9275 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 9295 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 9354 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | || |||||||| Sbjct 9355 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9414 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 9415 ATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCT 9472 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||||||||| Sbjct 9473 TGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9503 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 9523 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 9582 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | || |||||||| Sbjct 9583 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9642 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 9643 ATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCT 9700 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||||||||| Sbjct 9701 TGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9731 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 9751 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 9810 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | || |||||||| Sbjct 9811 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9870 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||||| Sbjct 9871 ATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTT 9928 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | || ||||| ||||||||||| Sbjct 9929 TACCAGTTAAGGTTTTCACGAAGATCTGCAT 9959 >SEQ11330 Length=6390 Score = 87.8 bits (96), Expect = 1e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 ||||| || ||| | || |||| |||||||| || || || ||||| || | |||||| Sbjct 6124 TAGTCAGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGG 6065 Query 34866 TCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCAC 34923 || | || | || |||| ||| ||||| ||||| || || || | |||| Sbjct 6064 TCAGGTGGGATGCCTTCCTCGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCAC 6007 Query 34924 CGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATAT 34983 || |||||| || | || ||||| || ||||| || |||||||| ||||||||||| | Sbjct 6006 TGGGCTCAACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGT 5947 Query 34984 T 34984 | Sbjct 5946 T 5946 >SEQ28820 Length=113666 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| || | | || |||| |||||||| ||||| ||||| Sbjct 62287 TCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAG 62346 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||| || | || | || ||||| || ||||| || || | Sbjct 62347 ATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 62406 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || || ||||| |||| || ||||| || ||| | || ||||||||| Sbjct 62407 TCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCATCAGGGTCTTCACA 62466 Query 34971 AAGATCTGCATATT 34984 || |||||||| || Sbjct 62467 AAAATCTGCATCTT 62480 >SEQ13217 Length=170878 Score = 84.2 bits (92), Expect = 1e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || | |||| ||| || ||||||||||| ||||| || | | || | Sbjct 167090 CTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCTA 167149 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||||||| ||||| ||| | || |||| ||||| || | || | || ||||| Sbjct 167150 TCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 167209 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| || || | |||| | || || ||||| || | || ||| Sbjct 167210 TCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATG 167269 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGA 34990 || || ||||| || ||||||||||| |||||||| || || || Sbjct 167270 GTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTTGGTGGA 167313 >SEQ35906 Length=62346 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA-AAGGCTTCGTTC 34825 ||||| || | |||| ||| || || |||||||| ||||| || || || || | Sbjct 33463 CTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGCA-CGGCC 33405 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| |||||||| || || ||||| || |||| ||| | || | || | || ||||| Sbjct 33404 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCCGATCAGGAGGAATTCCTTCCTT 33345 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 || ||||| || || | |||| | || || ||||| |||| || || Sbjct 33344 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCGAGGGTTCAACCTCGAGTGTGAT 33285 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| || ||||| || ||||||||||| |||||||| || Sbjct 33284 GGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTT 33246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324252089274456