Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value SEQ18817 120 3e-22 SEQ81609 114 1e-20 SEQ13259 102 9e-17 SEQ32083 98.7 1e-15 >SEQ18817 Length=114269 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || || || || |||| ||||| ||||| || | |||||||| || ||||| || ||| Sbjct 113861 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 113920 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| ||||||||||||||| ||||| || |||||||| || ||||| || Sbjct 113921 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 113980 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 113981 ACCACTCTTTCCCC 113994 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||||||| ||||||||||| ||||| || |||||||| || |||| Sbjct 106841 TGATACTCAGAAACTCTTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 106900 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 106901 ATAAAATCAAAGGGATTTT 106919 >SEQ81609 Length=287 Score = 114 bits (126), Expect = 1e-20 Identities = 194/273 (71%), Gaps = 11/273 (4%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||| ||||| | ||||||||| | ||| |||| |||||||||||| || Sbjct 271 TCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAATATTTTCCATCATG 212 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGT-TATCTGTACTTCACTA-CAAAATCTTT 19342 || || || || || ||| || | ||||| | ||| || |||||| || |||||| | | Sbjct 211 ATTTGGAAACCATAGAAAAATTTAGCTTCGGCATAT-TGCACTTCATTAACAAAAT-TCT 154 Query 19343 CGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAA 19402 | | | |||||||||||| ||||| || |||||| ||||| || | | |||||| | Sbjct 153 CAGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAAGAATATGTTTTA 94 Query 19403 TAA---AATGTTTTTCATC--TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAA 19457 ||| || | | ||||| | | ||| ||||||| ||||| | ||||| || || Sbjct 93 TAAAGTAACGCTCATCATCATTTAACTTA--TTATTCCAGTCATTTAAATCTTGTGACAA 36 Query 19458 ATCTACTTCTTCAACTGTCCAAAAAGAAGCCTC 19490 || | ||||||| ||||||||||| ||| || Sbjct 35 GTCAATTTCTTCAGCTGTCCAAAAACTAGCTTC 3 >SEQ13259 Length=38172 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||||||||| | ||| || |||| || | |||||| || | Sbjct 24150 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGGATGT 24091 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || || ||||| ||||| |||||||| ||||||||||| | | || | | Sbjct 24090 TGAGAGACTGGCTTTGATCGATAAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 24031 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||| | ||| || | ||| || || Sbjct 24030 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGG 23982 >SEQ32083 Length=112626 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||||| ||||| || | || ||||||||||| | || | Sbjct 102557 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGTCCCCGCTTCT 102616 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||| ||||| || ||||| || |||||||| | Sbjct 102617 TGAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACCGCTGCAAAGG 102676 Query 19103 CAAC 19106 | || Sbjct 102677 CCAC 102680 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || | || ||| || ||||| Sbjct 100938 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGAACTTGACATCACACCCATC 100995 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | || || ||| | |||| || |||||||| || || ||||| |||| ||| ||| | Sbjct 100996 CTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTT 101055 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 ||||| || ||||||||||||| ||| Sbjct 101056 TCCATGAAGTCAAATGGATTTTCTAC 101081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561431269184280