Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value SEQ81609 140 4e-28 SEQ32083 87.8 2e-12 >SEQ81609 Length=287 Score = 140 bits (154), Expect = 4e-28 Identities = 191/266 (72%), Gaps = 3/266 (1%) Strand=Plus/Minus Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499 ||| ||| ||||||||| || | | |||| ||||| ||||||||||| || Sbjct 271 TCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAATATTTTCCATCATG 212 Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTA 37559 || || |||||||| ||| | ||||||| | |||| || || |||| ||| ||| | Sbjct 211 ATTTGGAAACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATTAACAAAATTCTCA 152 Query 37560 GCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATA 37619 || | ||||||||||| || || || |||||| || || ||||||| || ||||||| Sbjct 151 GCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAAGAATATGTTTTATA 92 Query 37620 A---AATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCA 37676 | || | ||||||||| | || ||||| ||||| | ||||| ||| || ||| Sbjct 91 AAGTAACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAATCTTGTGACAAGTCA 32 Query 37677 ACTTCATCAACGGTCCAAAAACTTGC 37702 | ||| ||| | ||||||||||| || Sbjct 31 ATTTCTTCAGCTGTCCAAAAACTAGC 6 >SEQ32083 Length=112626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||||| | || || || || ||||| | || || || |||||||||||||| Sbjct 100983 CATCACACCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 101042 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||||||||| Sbjct 101043 TAGTGAAATATTTTCCATGAAGTCAAATGGATT 101075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591602858349080