Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value SEQ28820 125 6e-24 seq1037 125 6e-24 SEQ31259 122 7e-23 SEQ23137 122 7e-23 SEQ37766 114 1e-20 SEQ12264 95.1 1e-14 >SEQ28820 Length=113666 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | | ||| | | |||| Sbjct 62266 AACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCT 62325 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||| || ||||| |||| | ||| ||||| || ||||| ||||| ||||| Sbjct 62326 TCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 62385 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| |||||| || | ||| || || || |||| || Sbjct 62386 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTC 62445 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | || || ||||| |||||||| Sbjct 62446 TTCCCCATCAGGGTCTTCACAAAAATCTGCAT 62477 >seq1037 Length=126922 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| | |||||||||||| || ||||| || ||||| || | | ||| | | |||| Sbjct 82622 AAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCT 82563 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||| || ||||| |||| | ||| ||||| || | || | ||| ||||| Sbjct 82562 TCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGATATTCTTTCCTTATCC 82503 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| |||||| || | ||| || ||||| |||| || Sbjct 82502 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATGGTC 82443 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || ||||| |||||||| Sbjct 82442 TTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 82411 >SEQ31259 Length=129631 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| | ||||| || ||||| || | | ||| | | |||| Sbjct 129235 AACACAAGATGAAGGGTAGACTGCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCT 129294 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||| || ||||| |||| | ||| ||||| || ||||| ||||| |||||| Sbjct 129295 TCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCT 129354 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| ||||| |||||| || | ||| || || || |||| || Sbjct 129355 TGGATCTTGGCCTTTACATTTTCTGTAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTC 129414 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || ||||| |||||||| Sbjct 129415 TTCTCTGTAAGGGTCTTCACAAAAATCTGCAT 129446 >SEQ23137 Length=3047 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | | ||| | |||| Sbjct 35 AACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGGGCCATCT 94 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||| || ||| | |||| | ||| ||||| || ||||| ||||| ||||| Sbjct 95 TCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 154 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| |||||| || | ||| || || || |||| || Sbjct 155 TGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTC 214 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || ||||| |||||||| Sbjct 215 TTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 246 >SEQ37766 Length=173039 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||||||||| || ||||| || ||||| || | | ||| | |||| |||| || Sbjct 157095 ATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTG 157154 Query 101326 CTTACCTGCAAATA----TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381 ||| || ||||| | ||| | ||| ||||| || ||||| ||||| ||||| || | Sbjct 157155 CTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 157214 Query 101382 TTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGC 101441 | || | |||||| |||||| |||||| || | ||| || || || |||| || || | Sbjct 157215 -TCTTGGCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCC 157273 Query 101442 CGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || || ||||| |||||||| Sbjct 157274 CCGTCAGGGTCTTCACAAAAATCTGCAT 157301 >SEQ12264 Length=35191 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||||||||| | || ||||| || ||| | || | | | | | ||| Sbjct 34013 AACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGCAGTCAGGCAAAATAAGGCCATTT 33954 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||||| | ||||| |||| | ||| ||||| | ||||| |||| || || Sbjct 33953 TCCAGTTGCTTATCAGCAAAGATCAGCCTCTGCTGATCAGTAGGAATTCCTTACTTTTCC 33894 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| ||||||||||||| || ||||| || ||||| |||| | Sbjct 33893 TGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAGGTTTCAACCTCAAGCGTGATGATC 33834 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | || || ||||| |||| ||| Sbjct 33833 TTCCCCATAAGGGTCTTCACAAAAATCTTCAT 33802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395812692014439