Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value SEQ28820 104 2e-17 SEQ23137 104 2e-17 SEQ13217 95.1 9e-15 SEQ35906 89.7 4e-13 SEQ39859 87.8 1e-12 SEQ37766 87.8 1e-12 SEQ31259 86.0 5e-12 seq1037 86.0 5e-12 >SEQ28820 Length=113666 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||| ||||| ||||| | | | || | || Sbjct 62265 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 62324 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || ||||| ||||||| ||| ||||| | |||| || ||||| || Sbjct 62325 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 62384 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | || || || | || ||||| | ||| || || Sbjct 62385 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 62444 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||| ||| || || ||||||||||||||| || Sbjct 62445 CTTCCCCATCAGGGTCTTCACAAAAATCTGCATCTTG 62481 >SEQ23137 Length=3047 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||| ||||| ||||| | | | | | || Sbjct 34 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGGGCCATC 93 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || ||| | ||||||| ||| ||||| | |||| || ||||| || Sbjct 94 TTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 153 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | || ||||| | || ||||| | ||| || || Sbjct 154 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 213 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||||| || || ||||||||||||||| || Sbjct 214 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 250 >SEQ13217 Length=170878 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| || ||||| ||||| ||||| | | | || || Sbjct 167092 CAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCTATC 167151 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || ||| | ||||||| ||| ||||| | |||| || ||||| || Sbjct 167152 TTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 167211 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | || || || | || ||||| | ||| || || Sbjct 167212 TTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATGGT 167271 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | || || ||||||||||||||| || Sbjct 167272 CTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTTG 167308 >SEQ35906 Length=62346 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | || | || Sbjct 33461 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGCACGGCCATC 33402 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || ||||| ||||||| ||| |||| | |||| || ||||| || Sbjct 33401 TTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCCGATCAGGAGGAATTCCTTCCTTATC 33342 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || | || ||||| | || || || Sbjct 33341 CTGGATCTTGGCCTTTACATTTTCTATTGTGTCCGAGGGTTCAACCTCGAGTGTGATGGT 33282 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| | || || ||||||||||||||| Sbjct 33281 CTTCCCCGTAAGGGTCTTCACAAAAATCTGCATC 33248 >SEQ39859 Length=70141 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 |||||||| || |||||||||| | ||| ||| | || || || || || |||| Sbjct 42236 GGATAAAAAATCCGTTCACAAATGAGTTGCACAACTCGATCACCTTTTTTTACTTCAAAC 42177 Query 9127 T-CTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGAT 9185 | || | | || ||| |||||| | || || || || || |||||||| ||||| || Sbjct 42176 TTCTCTTTTCCAAA-ATTAAACAGCGCAACACCAACATTTCCTCTGTAATCTTCATCTAT 42118 Query 9186 CACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCG 9245 |||||||| || || || ||||||||||| | || | ||||| || || || | || Sbjct 42117 GACACCAGCTCCTACATCTATGAAGTGCTTTGCAGCCAAGCCAGATCGTGGAGCTACTCT 42058 Query 9246 ACCGTAGCATCC 9257 || ||||| || Sbjct 42057 TCCATAGCACCC 42046 >SEQ37766 Length=173039 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||| | ||| || || ||| |||||||| ||||| ||||| | | | | | || || Sbjct 157089 CACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTC 157148 Query 48617 CAACTGCTTACCGGCAAATATCAGTCG----CTGTTGATCCGTGGGAACGCCCTCCTTGT 48672 || |||||| || ||||| ||||||| ||| ||||| | |||| || ||||| | Sbjct 157149 CAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 157208 Query 48673 CGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCG 48732 | ||||| | |||||| | | || || || | || ||||| | ||| || | Sbjct 157209 CCTGGATCTTG-GCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGG 157267 Query 48733 TTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 | || ||||||| || || ||||||||||||||| || Sbjct 157268 TCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 157305 >SEQ31259 Length=129631 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || || |||||||| ||||| ||||| | | | || | || Sbjct 129234 CAACACAAGATGAAGGGTAGACTGCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 129293 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || ||||| ||||||| ||| ||||| | |||| || ||||| || Sbjct 129294 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 129353 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | || || || | || ||||| | ||| || || Sbjct 129354 TTGGATCTTGGCCTTTACATTTTCTGTAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 129413 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | || | || || ||||||||||||||| || Sbjct 129414 CTTCTCTGTAAGGGTCTTCACAAAAATCTGCATCATG 129450 >seq1037 Length=126922 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || | ||| || || ||| |||||||| ||||| ||||| | | | || | || Sbjct 82623 CAAAACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 82564 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || ||||| ||||||| ||| ||||| | | | | ||||| || Sbjct 82563 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGATATTCTTTCCTTATC 82504 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | || || || | || ||||| | ||| || || Sbjct 82503 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAACCTCAAGCGTGATGGT 82444 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | || || ||||||||||||||| || Sbjct 82443 CTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTTG 82407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380489920584921