Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value SEQ22689 188 1e-42 SEQ85364 185 2e-41 seq5848 185 2e-41 SEQ52205 141 2e-28 SEQ13259 104 4e-17 SEQ43402 89.7 1e-12 >SEQ22689 Length=34871 Score = 188 bits (208), Expect = 1e-42 Identities = 189/244 (77%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||| ||||| |||||||| || Sbjct 23448 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACTTGC 23389 Query 241445 TCCCGCAGAACGGACG-CGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCAC 241503 |||||||| ||| || | ||| | ||||| || ||||| || | |||||||| |||||| Sbjct 23388 TCCCGCAGGACGCCCGGCCGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCATCTTCAC 23329 Query 241504 TTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAA 241563 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 23328 CTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAG 23269 Query 241564 GCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGG 241623 | |||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 23268 CCTGTTCCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGG 23209 Query 241624 AGAC 241627 ||| Sbjct 23208 GGAC 23205 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 9/116 (8%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACG-CGGTATTGGACAGACCCGCG 238984 |||| ||||| |||||||| | |||||||| ||| || | ||| | ||||| |||||| Sbjct 23411 TCTGCTTGAGCTGGGCCACTTGCTCCCGCAGGACGCCCGGCCGTACTCGACAGCCCCGCG 23352 Query 238985 TTATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 || || | ||||||||| | |||||||| ||||||||||| |||||||| Sbjct 23351 TTCTCGGCCTTGAGCATCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 23296 >SEQ85364 Length=351 Score = 185 bits (204), Expect = 2e-41 Identities = 188/244 (77%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||| ||||| |||||||| || Sbjct 91 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACTTGC 150 Query 241445 TCCCGCAGAACGGACG-CGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCAC 241503 |||||||| ||| | | ||| | ||||| || ||||| || | |||||||| |||||| Sbjct 151 TCCCGCAGGACGCCGGGCCGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCATCTTCAC 210 Query 241504 TTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAA 241563 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 211 CTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAG 270 Query 241564 GCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGG 241623 | |||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 271 CCTGTTCCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGG 330 Query 241624 AGAC 241627 ||| Sbjct 331 GGAC 334 >seq5848 Length=75515 Score = 185 bits (204), Expect = 2e-41 Identities = 188/244 (77%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||| ||||| |||||||| || Sbjct 6845 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACTTGC 6904 Query 241445 TCCCGCAGAACGGACG-CGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCAC 241503 |||||||| ||| | | ||| | ||||| || ||||| || | |||||||| |||||| Sbjct 6905 TCCCGCAGGACGCCGGGCCGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCATCTTCAC 6964 Query 241504 TTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAA 241563 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 6965 CTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAG 7024 Query 241564 GCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGG 241623 | |||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 7025 CCTGTTCCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGG 7084 Query 241624 AGAC 241627 ||| Sbjct 7085 GGAC 7088 >SEQ52205 Length=135886 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 43524 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 43583 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| || ||||| Sbjct 43584 TCGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATCCGCTCCAGC 43643 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| || || | |||||| || || ||||| || ||||||||| Sbjct 43644 TTGCGCTTGCGGCACTTGGAAGCGGCTATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 43703 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||||||| ||||||||||| || ||| Sbjct 43704 ATGCGTTCCTGCGTGTCCATGTCGATGGGCGAC 43736 >SEQ13259 Length=38172 Score = 104 bits (114), Expect = 4e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 17263 GTGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGG 17204 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 17203 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTCTGTCTG 17145 Query 213647 GGAC 213650 ||| Sbjct 17144 AGAC 17141 >SEQ43402 Length=205341 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 202666 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 202607 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | || |||||||| || |||||| |||||||||| Sbjct 202606 GCGATGCGGTTCCTCATGCGCTTCCTCTCTGCCTTGATCCGCTCCTGGGACTCCATGTCG 202547 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 202546 ATAGGGGAC 202538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930409988583680