Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value SEQ32083 95.1 2e-14 SEQ18817 89.7 1e-12 SEQ13259 84.2 4e-11 >SEQ32083 Length=112626 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/138 (78%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || |||||||| || ||||| || ||||| ||| || || ||||| Sbjct 102692 GGAGAGCGTGTTGTGGCCTTTGCAGCGGTGGAAGGAATCTTCTTCTCTGGCTCTTTTGCA 102633 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGC 25990 | || |||||||||||| || |||||| |||||||| || ||| |||||||| |||| Sbjct 102632 TCGATATTCTGGCTCAAGAAG-CGGGGACTGATGCCCGGCCT-TACGTTTTCCAATGAGC 102575 Query 25991 TCATCAGCAGGGACGAGG 26008 | || ||||| ||||||| Sbjct 102574 TTATTAGCAGAGACGAGG 102557 >SEQ18817 Length=114269 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| |||||||||||||| || || || || ||| || || ||||| || || |||| Sbjct 113984 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCTGCTATATTCT 113925 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||| || || |||||| || ||||| |||||||||| Sbjct 113924 GGCTAAAGAAGAGAGGCCTCATGCCTGGACTTACCTTTTCAAATGAGCTGATCAGCAGGG 113865 Query 26003 ACGA 26006 | || Sbjct 113864 ATGA 113861 >SEQ13259 Length=38172 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| |||||| |||| |||| | ||||| || || ||||||||||||||||||||| Sbjct 17278 ACCTCATCCTTGCTGGTGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTC 17219 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | || || ||| ||||| | || ||||||||||| | || | Sbjct 17218 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTG 17159 Query 221852 CCAGTCTCCAGCTGAG 221867 || ||||| ||||| Sbjct 17158 CCCGTCTCTGTCTGAG 17143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927725228530880