Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value SEQ24951 165 1e-35 SEQ35096 89.7 7e-13 >SEQ24951 Length=79824 Score = 165 bits (182), Expect = 1e-35 Identities = 224/310 (72%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCACTTCGAT-CGCCCGCGTCCCTCAGAT 153760 ||| ||||||||||| ||||| | ||| | | || | | | || ||| | ||| Sbjct 48755 AGTGGAAGTGGTAACCCAGGACG-AAAGAAAGCTGCTCCACACATCTGCATCCTTACGAT 48697 Query 153761 GCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAG 153820 | || ||||||| | || ||||| || ||||| || ||||| |||||||||||||| Sbjct 48696 GTTCTCTGAAAACATCCCAGGAACCCTTGATTGTGACATGGCAGAAGAAGAAAGCTGTGA 48637 Query 153821 GTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATA 153880 | ||||| || ||| || || |||||| |||| || || ||| | ||||| | |||| Sbjct 48636 GCCCAGAGAACATGATTACTTACAGCAAAACCCATGGGGTTGTGGTCCAGCCTGCCTATA 48577 Query 153881 AAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATG 153940 ||| ||| | || || || || | || || | |||| || || || || ||||| Sbjct 48576 GAGACAGAGTAAACATTACTGAGCTGGGACTCTGGAACACGAGCATCACCTTCTGGAACA 48517 Query 153941 CAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGG 154000 | ||| |||||||||| ||||| || |||||||| || |||| || |||||||| |||| Sbjct 48516 CCACAGTGGATGATGAGGGCTGCTACATGTGTCTCTTCAATACCTTTGGTTCTGGGAAGG 48457 Query 154001 TATCGGGAAC 154010 | |||||||| Sbjct 48456 TCTCGGGAAC 48447 >SEQ35096 Length=53047 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 2660 TTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAATCATC 2719 |||| |||| |||||||| || | ||| || |||||||||||| | |||||||| ||| | Sbjct 42291 TTTCCTAAGTAGATACAAGGGGACTTTTGACTACTGGATCGGCCTGCACAGAGAGTCACC 42232 Query 2720 AGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGTCTG 2773 | ||| || |||| |||||| || ||||| ||| ||| || |||| || || Sbjct 42231 ACAACTCCCTTGGAGATGGGCAGACAATACTGAATATAACAACACGTATGTTTG 42178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 648516575325520